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The map label for this gene is rfbD [H]

Identifier: 222109770

GI number: 222109770

Start: 572108

End: 572998

Strand: Direct

Name: rfbD [H]

Synonym: Dtpsy_0554

Alternate gene names: 222109770

Gene position: 572108-572998 (Clockwise)

Preceding gene: 222109769

Following gene: 222109771

Centisome position: 15.07

GC content: 67.56

Gene sequence:

>891_bases
ATGAACATCCTCTTGCTGGGCAAGAGCGGCCAGGTGGGCTGGGAACTGCAGCGCAGCCTGGCCGTGCTGGGCCGGGTCAC
CGCGCTGGACCACGACAGCACCGAGCACTGCGGCGACTTTGCCAACCCGGAAGGCGTGCGCGAGACCGTGCGCGCCCTGC
GGCCTGACGTCATCGTCAACGCCGCCGCCCACACTGCCGTGGACAAGGCCGAGAGCGAACCCGAGATTGCCCGGCTGCTC
AATGCCACCACTCCCGGCGTGCTGGCAGAAGAAGCTGCGCGCCTGGGTACCTGGCTCGTTCACTACAGCACCGACTACGT
GTTCGACGGCAGCGGCACGCGGCCTTGGGTGGAAACCGATGCGCCGGCTCCGCTGTCAGTCTATGGCGCCACCAAGCTGG
AGGGCGAGCAGCGCATCCAGCAGACAGGGTGCCGCCACCTCATCCTGCGCACCAGCTGGGTCTATGCCGCACGCGGCGGC
AACTTTGCCAAGACCATGCTCCGCTTAGGCAGCGAGCGCGAGCGCCTCACCGTCATCGACGACCAGTGGGGTGCGCCCAC
GGGGGCTGACCTGCTGGCCGACGTGACGGCACATGCCGTCCGCCATCTGCAAAGCCGCCCCGGGGACGGCGGCCTGTACC
ACTGCGTGGCGAGCGGCGAGACGAACTGGCACTCCTATGCGAAATACGTTCTGGAGCATGCCAGGCAAGCGCAACCAGCT
ATTGAATTGAAAGCAACCGAGGTGGCGCCCGTGCCCACCAGCGCCTTTCCTACGCCGGCGCGGCGCCCGCACAACTCGCG
CTTGGACACCACCCGGCTGCAAACCACCTTCGGCCTGGTGCTGCCGCCTTGGCAGCAGGGCGTGGCGCGCATGCTCACCG
AAATCCTCTGA

Upstream 100 bases:

>100_bases
AGACCGTGCAGTGGTACCTGGACCACCCCGAATGGGTGGCCCAGGTGCAAAGCGGTGCCTACCGCGAGTGGGTGCAAAAG
CAATACGAAGGTGCTGCGGC

Downstream 100 bases:

>100_bases
CCGAACACCCCCCCATTGCAATGACGACACCCACGCGCAAGGGCATCATCCTGGCCGGCGGCTCCGGCACCCGCCTGCAC
CCGGCAACGCTTGCCATCAG

Product: dtdp-4-dehydrorhamnose reductase

Products: NA

Alternate protein names: dTDP-4-keto-L-rhamnose reductase; dTDP-6-deoxy-L-lyxo-4-hexulose reductase; dTDP-6-deoxy-L-mannose dehydrogenase; dTDP-L-rhamnose synthase [H]

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MNILLLGKSGQVGWELQRSLAVLGRVTALDHDSTEHCGDFANPEGVRETVRALRPDVIVNAAAHTAVDKAESEPEIARLL
NATTPGVLAEEAARLGTWLVHYSTDYVFDGSGTRPWVETDAPAPLSVYGATKLEGEQRIQQTGCRHLILRTSWVYAARGG
NFAKTMLRLGSERERLTVIDDQWGAPTGADLLADVTAHAVRHLQSRPGDGGLYHCVASGETNWHSYAKYVLEHARQAQPA
IELKATEVAPVPTSAFPTPARRPHNSRLDTTRLQTTFGLVLPPWQQGVARMLTEIL

Sequences:

>Translated_296_residues
MNILLLGKSGQVGWELQRSLAVLGRVTALDHDSTEHCGDFANPEGVRETVRALRPDVIVNAAAHTAVDKAESEPEIARLL
NATTPGVLAEEAARLGTWLVHYSTDYVFDGSGTRPWVETDAPAPLSVYGATKLEGEQRIQQTGCRHLILRTSWVYAARGG
NFAKTMLRLGSERERLTVIDDQWGAPTGADLLADVTAHAVRHLQSRPGDGGLYHCVASGETNWHSYAKYVLEHARQAQPA
IELKATEVAPVPTSAFPTPARRPHNSRLDTTRLQTTFGLVLPPWQQGVARMLTEIL
>Mature_296_residues
MNILLLGKSGQVGWELQRSLAVLGRVTALDHDSTEHCGDFANPEGVRETVRALRPDVIVNAAAHTAVDKAESEPEIARLL
NATTPGVLAEEAARLGTWLVHYSTDYVFDGSGTRPWVETDAPAPLSVYGATKLEGEQRIQQTGCRHLILRTSWVYAARGG
NFAKTMLRLGSERERLTVIDDQWGAPTGADLLADVTAHAVRHLQSRPGDGGLYHCVASGETNWHSYAKYVLEHARQAQPA
IELKATEVAPVPTSAFPTPARRPHNSRLDTTRLQTTFGLVLPPWQQGVARMLTEIL

Specific function: Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4- hexulose to yield dTDP-L-rhamnose. RmlD uses NADH and NADPH nearly equally well [H]

COG id: COG1091

COG function: function code M; dTDP-4-dehydrorhamnose reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dTDP-4-dehydrorhamnose reductase family [H]

Homologues:

Organism=Homo sapiens, GI11034825, Length=268, Percent_Identity=29.4776119402985, Blast_Score=100, Evalue=1e-21,
Organism=Homo sapiens, GI33519455, Length=268, Percent_Identity=29.4776119402985, Blast_Score=100, Evalue=1e-21,
Organism=Escherichia coli, GI1788352, Length=296, Percent_Identity=63.8513513513513, Blast_Score=400, Evalue=1e-113,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005913
- InterPro:   IPR016040 [H]

Pfam domain/function: PF04321 RmlD_sub_bind [H]

EC number: =1.1.1.133 [H]

Molecular weight: Translated: 32336; Mature: 32336

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNILLLGKSGQVGWELQRSLAVLGRVTALDHDSTEHCGDFANPEGVRETVRALRPDVIVN
CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCEEE
AAAHTAVDKAESEPEIARLLNATTPGVLAEEAARLGTWLVHYSTDYVFDGSGTRPWVETD
HHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCCC
APAPLSVYGATKLEGEQRIQQTGCRHLILRTSWVYAARGGNFAKTMLRLGSERERLTVID
CCCCEEEECCCCCCHHHHHHHHHHHEEEHHHCEEEEECCCHHHHHHHHHCCCCCEEEEEE
DQWGAPTGADLLADVTAHAVRHLQSRPGDGGLYHCVASGETNWHSYAKYVLEHARQAQPA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
IELKATEVAPVPTSAFPTPARRPHNSRLDTTRLQTTFGLVLPPWQQGVARMLTEIL
EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEECCHHHHHHHHHHHHC
>Mature Secondary Structure
MNILLLGKSGQVGWELQRSLAVLGRVTALDHDSTEHCGDFANPEGVRETVRALRPDVIVN
CEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCHHHCCCCCCHHHHHHHHHHHCCCCEEE
AAAHTAVDKAESEPEIARLLNATTPGVLAEEAARLGTWLVHYSTDYVFDGSGTRPWVETD
HHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHEEEEECCCEEECCCCCCCCCCCC
APAPLSVYGATKLEGEQRIQQTGCRHLILRTSWVYAARGGNFAKTMLRLGSERERLTVID
CCCCEEEECCCCCCHHHHHHHHHHHEEEHHHCEEEEECCCHHHHHHHHHCCCCCEEEEEE
DQWGAPTGADLLADVTAHAVRHLQSRPGDGGLYHCVASGETNWHSYAKYVLEHARQAQPA
CCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCC
IELKATEVAPVPTSAFPTPARRPHNSRLDTTRLQTTFGLVLPPWQQGVARMLTEIL
EEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCEEECCHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]