| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222109702
Identifier: 222109702
GI number: 222109702
Start: 498287
End: 499546
Strand: Direct
Name: 222109702
Synonym: Dtpsy_0484
Alternate gene names: NA
Gene position: 498287-499546 (Clockwise)
Preceding gene: 222109698
Following gene: 222109705
Centisome position: 13.12
GC content: 74.6
Gene sequence:
>1260_bases ATGGACACCATGGACACAACCGGCTTCCAGGACACGCTGGCCGTTCTGGCGGGCGCCCTGGGCAGCGGCCTGCTGATGGG TATCGAGCGCGAACGGCGCAAGGGCCAGGGCCCGTTGCGCGCGCTCGCGGGCGTGCGCTCGTTCACGCTGGCGGCGGTGT CGGGTGCGACGGCGGCGCTGCTGGGCAGCGAGGCGCTGGTGGCGGTGGGCGCGGTGTTCATTGCGCTGCTGGGCGTGGTG GCCTATGCGCGCGACCGCTCCGAAGACCCCGGCGTGACCACCGAGATCGCGCTGCTGCTGGCCTACCTGATCGGCGTGCT GTGCACGCAGAGCCTGCCCGTGGCGGCGGGGCTGGCCGTCGCCGTCACCAGCCTGCTGGCGGCGCGTGAGGCGCTGCACG AGTTTTCGCGCGAGTGGCTGCGCCAGGGCGAGGTGCGGGGCGGGCTGATCCTGGCTGCGCTGGCGCTGCTGGTATTGCCG CTGGCGCCCAACCAGCCCCTGTGGGGGGAGGCGCTGAACCCCCAGGTGCTAGTGCGCCTGGTGGTGGTGCTGCTGGTGAT CCAGGCGCTGGCGCATCTGGCGCGCCGGCTCATGGACGCGCGCCGCGCGAACGCCCTGTCGGCGCTGGCCTCGGGTTTCA TCTCCAGCACCGCCACCATCGCCAGCCTGGGCGTGGCCGTGCGCGAGGGGCGCGAGCCCGTGCGCGCGCAGGGGGGCGCG GCCGTGCTGTCGTGCGTGGCGACCATGGCGCAGATCCTGGTGGTGGCGGCCACCGTGCAGCCCCAGTGGCTGGTGCGGTT GTGGGCGCCGGCCCTGGCGGGCGGGGTGGTGGCGCTGGTCTGGGGGGTGGCGCTGCTGCGCAGCATGCCCGCGGGTGAGG CGCCGGCCCCGGCGGACGTGGACGGCACGGCGCTGTTCAAGCTGCGCGACGCGCTGCTGATCGCCGCGCTGCTCACGGCT GTGCAGGTGCTGGTGCAGGCACTGCGCGGCTGGTGGGGCGACGCGGGCTTGCTGGCCGGTGCTCTGGTGGCGGCGCTGGC CGACGTCCATGCGGCCGCCGCGGCCATCATGTCGCAGGGCCGGCCGCTGGACCCCGTGGGGCCCAGCCTGGTGAGCGCGC TGGCGGCGGGGCTGAGCGTGCACGCCGTCAGCAAATGCGTGACGGCCCTGGTCAGCGGGGGCTGGCGTTATGCCGTGGCG GCCGGCGGCGGCGTGGTGCTGCACACGCTGGCCTTCGTCGCGGTGCTGTTGCTACTCTAA
Upstream 100 bases:
>100_bases GACAAGCGCTGATAGCTATCAAAACCAGAGTTTTCTGAGAGCGGGGCGCCCTTTGGATGCCCGCTTTCCATGGTCCAATC GTCAAAGCCAACCAACCACG
Downstream 100 bases:
>100_bases ATTGATAAAAAGCGGCTCAAACGCTTATGGGATAAGCGCGAGCAGCTATCGATGAAATAGCAATGGCTGCGGCTACTGGA ACGCCACCTCGGCAAAGCTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 419; Mature: 419
Protein sequence:
>419_residues MDTMDTTGFQDTLAVLAGALGSGLLMGIERERRKGQGPLRALAGVRSFTLAAVSGATAALLGSEALVAVGAVFIALLGVV AYARDRSEDPGVTTEIALLLAYLIGVLCTQSLPVAAGLAVAVTSLLAAREALHEFSREWLRQGEVRGGLILAALALLVLP LAPNQPLWGEALNPQVLVRLVVVLLVIQALAHLARRLMDARRANALSALASGFISSTATIASLGVAVREGREPVRAQGGA AVLSCVATMAQILVVAATVQPQWLVRLWAPALAGGVVALVWGVALLRSMPAGEAPAPADVDGTALFKLRDALLIAALLTA VQVLVQALRGWWGDAGLLAGALVAALADVHAAAAAIMSQGRPLDPVGPSLVSALAAGLSVHAVSKCVTALVSGGWRYAVA AGGGVVLHTLAFVAVLLLL
Sequences:
>Translated_419_residues MDTMDTTGFQDTLAVLAGALGSGLLMGIERERRKGQGPLRALAGVRSFTLAAVSGATAALLGSEALVAVGAVFIALLGVV AYARDRSEDPGVTTEIALLLAYLIGVLCTQSLPVAAGLAVAVTSLLAAREALHEFSREWLRQGEVRGGLILAALALLVLP LAPNQPLWGEALNPQVLVRLVVVLLVIQALAHLARRLMDARRANALSALASGFISSTATIASLGVAVREGREPVRAQGGA AVLSCVATMAQILVVAATVQPQWLVRLWAPALAGGVVALVWGVALLRSMPAGEAPAPADVDGTALFKLRDALLIAALLTA VQVLVQALRGWWGDAGLLAGALVAALADVHAAAAAIMSQGRPLDPVGPSLVSALAAGLSVHAVSKCVTALVSGGWRYAVA AGGGVVLHTLAFVAVLLLL >Mature_419_residues MDTMDTTGFQDTLAVLAGALGSGLLMGIERERRKGQGPLRALAGVRSFTLAAVSGATAALLGSEALVAVGAVFIALLGVV AYARDRSEDPGVTTEIALLLAYLIGVLCTQSLPVAAGLAVAVTSLLAAREALHEFSREWLRQGEVRGGLILAALALLVLP LAPNQPLWGEALNPQVLVRLVVVLLVIQALAHLARRLMDARRANALSALASGFISSTATIASLGVAVREGREPVRAQGGA AVLSCVATMAQILVVAATVQPQWLVRLWAPALAGGVVALVWGVALLRSMPAGEAPAPADVDGTALFKLRDALLIAALLTA VQVLVQALRGWWGDAGLLAGALVAALADVHAAAAAIMSQGRPLDPVGPSLVSALAAGLSVHAVSKCVTALVSGGWRYAVA AGGGVVLHTLAFVAVLLLL
Specific function: Unknown
COG id: COG3174
COG function: function code S; Predicted membrane protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42613; Mature: 42613
Theoretical pI: Translated: 8.89; Mature: 8.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTMDTTGFQDTLAVLAGALGSGLLMGIERERRKGQGPLRALAGVRSFTLAAVSGATAAL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHH LGSEALVAVGAVFIALLGVVAYARDRSEDPGVTTEIALLLAYLIGVLCTQSLPVAAGLAV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AVTSLLAAREALHEFSREWLRQGEVRGGLILAALALLVLPLAPNQPLWGEALNPQVLVRL HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH VVVLLVIQALAHLARRLMDARRANALSALASGFISSTATIASLGVAVREGREPVRAQGGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHH AVLSCVATMAQILVVAATVQPQWLVRLWAPALAGGVVALVWGVALLRSMPAGEAPAPADV HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DGTALFKLRDALLIAALLTAVQVLVQALRGWWGDAGLLAGALVAALADVHAAAAAIMSQG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC RPLDPVGPSLVSALAAGLSVHAVSKCVTALVSGGWRYAVAAGGGVVLHTLAFVAVLLLL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC >Mature Secondary Structure MDTMDTTGFQDTLAVLAGALGSGLLMGIERERRKGQGPLRALAGVRSFTLAAVSGATAAL CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHH LGSEALVAVGAVFIALLGVVAYARDRSEDPGVTTEIALLLAYLIGVLCTQSLPVAAGLAV HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH AVTSLLAAREALHEFSREWLRQGEVRGGLILAALALLVLPLAPNQPLWGEALNPQVLVRL HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHH VVVLLVIQALAHLARRLMDARRANALSALASGFISSTATIASLGVAVREGREPVRAQGGA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCHH AVLSCVATMAQILVVAATVQPQWLVRLWAPALAGGVVALVWGVALLRSMPAGEAPAPADV HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC DGTALFKLRDALLIAALLTAVQVLVQALRGWWGDAGLLAGALVAALADVHAAAAAIMSQG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC RPLDPVGPSLVSALAAGLSVHAVSKCVTALVSGGWRYAVAAGGGVVLHTLAFVAVLLLL CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA