| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is yecA [C]
Identifier: 222109562
GI number: 222109562
Start: 351624
End: 352454
Strand: Direct
Name: yecA [C]
Synonym: Dtpsy_0342
Alternate gene names: 222109562
Gene position: 351624-352454 (Clockwise)
Preceding gene: 222109561
Following gene: 222109570
Centisome position: 9.26
GC content: 69.92
Gene sequence:
>831_bases ATGAACGCCACCTCCGACACCCCCGCATCCGCCGCCGCCCCCGCCCTGGGGCCGGACGAACTGGACGAACTCGACAGTCT GCTGGACGACCTGCGCACGCGTGAGGAAGATGTGCCGCAGTGGGAGTTCTGCGACGGCTTCCTGACGGCGCTGGTCTGCA CGCGCCGCCCCGTGCCCGCGGCGGAATGGCTGCCCATGCTGCTGGGCGACGGCCTGGAGCTGGACGTGGCCGAAGGCGAG CCCCTGCCGCTGGTGCCCACGTTCAAGGACCTGGCGCAGCAGGAGCGCTTCCTTGCCTTGTGGGAGCTGCGCCGCGCCGA GGTGCAGGCGCAACTGGACGAGCAGGCCGAATCGCTGGACGCCGACAACGCCTTCCAGCCCGAGGTGATCGACATGCGCG GCGCCATCGCCAGCCTGCCCGAGGAGGAGCGCGCCGAGATGGCGGGGCAGGAGATTCCTTCCTTCGGCCAGGTCTGGGCG CTGGGCTTCATGTTCGCCGTGGAGAACTGGCCCGAGGACTGGGCCACCCCGCGCGACAAGGAAGCCGCCCAGTGGCTGGA CGGCGCGCTCGAATCCATCGTCGCCCTCACCGAGGACGACACCGGCAAGCCCGAGATCTGCATGTACGCCGAAGACGGCC CGCCCAGTACCAGCCAGGAGCGCCTGGAGGTCTTTGGCGAGGCCATCTGGGGCGTGTACGACCTGCGCCAGCTCTGGCGC AGCCTGGGTCCGCGCCAGGAAACCATCGTCAAGGGCGAGCAGCCCGGCCGCAACGACCCCTGCCCTTGCGGCAGCGGCAA GAAGTACAAGAAGTGCTGCGGCGCGGCTTGA
Upstream 100 bases:
>100_bases CTGATGCGCGGCCTGCGGCGTTACACTGCGCGCCTCAGGCCTCCTGGGGCCCGTTTCTCCTCCTCCTTAGCCCGCGGGTC CAAGCCCCGCCCGATTCCGC
Downstream 100 bases:
>100_bases CGCGGCTGTGGCCAGGTATGGCTGGCCTGGCACGGCCTTGCCTGGTGTAGCTGGCCTGGCGCGGCCCGGCCTGGCGCGGC CCGGCCTGACGCGGCCCGGC
Product: sec-c motif domain-containing protein
Products: NA
Alternate protein names: Sec-C Motif Domain Protein; YecA Family Protein; SEC-C Motif Domain Protein; Preprotein Translocase SecA Subunit
Number of amino acids: Translated: 276; Mature: 276
Protein sequence:
>276_residues MNATSDTPASAAAPALGPDELDELDSLLDDLRTREEDVPQWEFCDGFLTALVCTRRPVPAAEWLPMLLGDGLELDVAEGE PLPLVPTFKDLAQQERFLALWELRRAEVQAQLDEQAESLDADNAFQPEVIDMRGAIASLPEEERAEMAGQEIPSFGQVWA LGFMFAVENWPEDWATPRDKEAAQWLDGALESIVALTEDDTGKPEICMYAEDGPPSTSQERLEVFGEAIWGVYDLRQLWR SLGPRQETIVKGEQPGRNDPCPCGSGKKYKKCCGAA
Sequences:
>Translated_276_residues MNATSDTPASAAAPALGPDELDELDSLLDDLRTREEDVPQWEFCDGFLTALVCTRRPVPAAEWLPMLLGDGLELDVAEGE PLPLVPTFKDLAQQERFLALWELRRAEVQAQLDEQAESLDADNAFQPEVIDMRGAIASLPEEERAEMAGQEIPSFGQVWA LGFMFAVENWPEDWATPRDKEAAQWLDGALESIVALTEDDTGKPEICMYAEDGPPSTSQERLEVFGEAIWGVYDLRQLWR SLGPRQETIVKGEQPGRNDPCPCGSGKKYKKCCGAA >Mature_276_residues MNATSDTPASAAAPALGPDELDELDSLLDDLRTREEDVPQWEFCDGFLTALVCTRRPVPAAEWLPMLLGDGLELDVAEGE PLPLVPTFKDLAQQERFLALWELRRAEVQAQLDEQAESLDADNAFQPEVIDMRGAIASLPEEERAEMAGQEIPSFGQVWA LGFMFAVENWPEDWATPRDKEAAQWLDGALESIVALTEDDTGKPEICMYAEDGPPSTSQERLEVFGEAIWGVYDLRQLWR SLGPRQETIVKGEQPGRNDPCPCGSGKKYKKCCGAA
Specific function: Unknown
COG id: COG3318
COG function: function code R; Predicted metal-binding protein related to the C-terminal domain of SecA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1788219, Length=261, Percent_Identity=27.9693486590038, Blast_Score=65, Evalue=4e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 30512; Mature: 30512
Theoretical pI: Translated: 3.88; Mature: 3.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNATSDTPASAAAPALGPDELDELDSLLDDLRTREEDVPQWEFCDGFLTALVCTRRPVPA CCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH AEWLPMLLGDGLELDVAEGEPLPLVPTFKDLAQQERFLALWELRRAEVQAQLDEQAESLD HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADNAFQPEVIDMRGAIASLPEEERAEMAGQEIPSFGQVWALGFMFAVENWPEDWATPRDK CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCH EAAQWLDGALESIVALTEDDTGKPEICMYAEDGPPSTSQERLEVFGEAIWGVYDLRQLWR HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SLGPRQETIVKGEQPGRNDPCPCGSGKKYKKCCGAA HCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC >Mature Secondary Structure MNATSDTPASAAAPALGPDELDELDSLLDDLRTREEDVPQWEFCDGFLTALVCTRRPVPA CCCCCCCCCHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCH AEWLPMLLGDGLELDVAEGEPLPLVPTFKDLAQQERFLALWELRRAEVQAQLDEQAESLD HHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC ADNAFQPEVIDMRGAIASLPEEERAEMAGQEIPSFGQVWALGFMFAVENWPEDWATPRDK CCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHCCCCCH EAAQWLDGALESIVALTEDDTGKPEICMYAEDGPPSTSQERLEVFGEAIWGVYDLRQLWR HHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHH SLGPRQETIVKGEQPGRNDPCPCGSGKKYKKCCGAA HCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA