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The map label for this gene is cph2 [H]

Identifier: 222109472

GI number: 222109472

Start: 270065

End: 270997

Strand: Direct

Name: cph2 [H]

Synonym: Dtpsy_0252

Alternate gene names: 222109472

Gene position: 270065-270997 (Clockwise)

Preceding gene: 222109471

Following gene: 222109475

Centisome position: 7.11

GC content: 67.42

Gene sequence:

>933_bases
ATGACGCCGCATGAACCACCCGAAAGCGCGCTCTATCGCACCCTGCTCGAATCCACGCGCGCCATTCCGTGGAAGATCGA
CTGGGCCACGGCGACCTTTGCCTACATCGGCCCGCAGATCGAGGACCTGCTGGGCTGGGCGCCCACCAGCTGGCGCACCG
TGCAGGATTGGGCCGACCGCATGCACCCCGACGACCGGGACCGGGTGGTCAACTTCTGCATTTCGCAATCCCAGTCGGGC
GTGGACCACGAGGCGGACTACCGCGCGCTCACCACAGGCGGGGATTACGTGTGGATCCGCGACGTGGTGCATGTGGTGCG
CGACTTGCAGGGCAATGTGGTGTCGCTCGTGGGCTTCATGTTCGACATCACCGAGCGCAAGCAGAACGAACACCAGCTGC
TGCAACTGCAGCAGGAGCTGCAGGAGTTGTCATTCCGCGACGGGCTCACGGGTGTGAACAACCGCCGCAAGTTCGACGCG
GTGTACGAGCGCGAATGGCAGGAGGCGCAGCGCACCGGCGAGCCGCTGTCGCTGCTGATGTTCGACGTGGATTTCTTCAA
GAGCTACAACGACCAGTACGGCCACGTGGAGGGCGACGAGTGCCTGCGGCGCGTGGCCCGCGCGCTGCAGCAGGCCGCCC
ACCGCCCGCGCGACTGCCTGGCGCGCTACGGGGGCGAGGAGTTCGTGCTGCTGCTGCCCGGCGCGGATGCATCTTCCGCG
CGCGCGGTGGCGCAGCGCTGCATGCAGGAGGTGGCCCACGCCGGTATCGTCCATGCGGCTTCGCCCTTGGGCCAGCAGCT
CACGGTGAGCGTGGGCATGGGCACGGCCCTGCCCGGCACGCAGGATGACTCCAAGCGGTTCCTGGAAACGGTGGACCGTT
GCCTTTACCGCGCCAAGCATGCGGGGCGCAACCGCATCGAGGCCACGGCCTGA

Upstream 100 bases:

>100_bases
TGCAGGAGTGGTGCGGCGTGGTGTCCCCCCGTGCCCGCCACGGTTGCTGTCGCGTCGCCCTGCTAAGCTTGCTGCGTCTT
CACGGCCAGCCGGAGCCCCC

Downstream 100 bases:

>100_bases
CCGCTATGAACGCGCGGCCAGCACCGGGAACAGCTTGCTCAGCCCGTCGGCCATCACCTCCACGGCCAGCGCCGCGAGGA
TCAGCCCCATGAGCCGCGTC

Product: PAS/PAC sensor-containing diguanylate cyclase

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MTPHEPPESALYRTLLESTRAIPWKIDWATATFAYIGPQIEDLLGWAPTSWRTVQDWADRMHPDDRDRVVNFCISQSQSG
VDHEADYRALTTGGDYVWIRDVVHVVRDLQGNVVSLVGFMFDITERKQNEHQLLQLQQELQELSFRDGLTGVNNRRKFDA
VYEREWQEAQRTGEPLSLLMFDVDFFKSYNDQYGHVEGDECLRRVARALQQAAHRPRDCLARYGGEEFVLLLPGADASSA
RAVAQRCMQEVAHAGIVHAASPLGQQLTVSVGMGTALPGTQDDSKRFLETVDRCLYRAKHAGRNRIEATA

Sequences:

>Translated_310_residues
MTPHEPPESALYRTLLESTRAIPWKIDWATATFAYIGPQIEDLLGWAPTSWRTVQDWADRMHPDDRDRVVNFCISQSQSG
VDHEADYRALTTGGDYVWIRDVVHVVRDLQGNVVSLVGFMFDITERKQNEHQLLQLQQELQELSFRDGLTGVNNRRKFDA
VYEREWQEAQRTGEPLSLLMFDVDFFKSYNDQYGHVEGDECLRRVARALQQAAHRPRDCLARYGGEEFVLLLPGADASSA
RAVAQRCMQEVAHAGIVHAASPLGQQLTVSVGMGTALPGTQDDSKRFLETVDRCLYRAKHAGRNRIEATA
>Mature_309_residues
TPHEPPESALYRTLLESTRAIPWKIDWATATFAYIGPQIEDLLGWAPTSWRTVQDWADRMHPDDRDRVVNFCISQSQSGV
DHEADYRALTTGGDYVWIRDVVHVVRDLQGNVVSLVGFMFDITERKQNEHQLLQLQQELQELSFRDGLTGVNNRRKFDAV
YEREWQEAQRTGEPLSLLMFDVDFFKSYNDQYGHVEGDECLRRVARALQQAAHRPRDCLARYGGEEFVLLLPGADASSAR
AVAQRCMQEVAHAGIVHAASPLGQQLTVSVGMGTALPGTQDDSKRFLETVDRCLYRAKHAGRNRIEATA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=196, Percent_Identity=36.2244897959184, Blast_Score=117, Evalue=1e-27,
Organism=Escherichia coli, GI1786584, Length=184, Percent_Identity=36.4130434782609, Blast_Score=113, Evalue=2e-26,
Organism=Escherichia coli, GI87081881, Length=193, Percent_Identity=37.3056994818653, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787262, Length=166, Percent_Identity=31.9277108433735, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI87082007, Length=177, Percent_Identity=34.4632768361582, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.7560975609756, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1787802, Length=162, Percent_Identity=32.7160493827161, Blast_Score=83, Evalue=3e-17,
Organism=Escherichia coli, GI1788381, Length=220, Percent_Identity=29.0909090909091, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788085, Length=187, Percent_Identity=29.4117647058824, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1787541, Length=196, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=27.6073619631902, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI87081974, Length=120, Percent_Identity=28.3333333333333, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 35147; Mature: 35016

Theoretical pI: Translated: 5.59; Mature: 5.59

Prosite motif: PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPHEPPESALYRTLLESTRAIPWKIDWATATFAYIGPQIEDLLGWAPTSWRTVQDWADR
CCCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHH
MHPDDRDRVVNFCISQSQSGVDHEADYRALTTGGDYVWIRDVVHVVRDLQGNVVSLVGFM
CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHH
FDITERKQNEHQLLQLQQELQELSFRDGLTGVNNRRKFDAVYEREWQEAQRTGEPLSLLM
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
FDVDFFKSYNDQYGHVEGDECLRRVARALQQAAHRPRDCLARYGGEEFVLLLPGADASSA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCHHH
RAVAQRCMQEVAHAGIVHAASPLGQQLTVSVGMGTALPGTQDDSKRFLETVDRCLYRAKH
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AGRNRIEATA
CCCCCCCCCC
>Mature Secondary Structure 
TPHEPPESALYRTLLESTRAIPWKIDWATATFAYIGPQIEDLLGWAPTSWRTVQDWADR
CCCCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHCCHHHHHHCCCCCCCHHHHHHHHH
MHPDDRDRVVNFCISQSQSGVDHEADYRALTTGGDYVWIRDVVHVVRDLQGNVVSLVGFM
CCCCHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHH
FDITERKQNEHQLLQLQQELQELSFRDGLTGVNNRRKFDAVYEREWQEAQRTGEPLSLLM
HHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHH
FDVDFFKSYNDQYGHVEGDECLRRVARALQQAAHRPRDCLARYGGEEFVLLLPGADASSA
HHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHCCCCEEEEEECCCCCHHH
RAVAQRCMQEVAHAGIVHAASPLGQQLTVSVGMGTALPGTQDDSKRFLETVDRCLYRAKH
HHHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHH
AGRNRIEATA
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]