| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is yggG [H]
Identifier: 222109439
GI number: 222109439
Start: 238913
End: 239848
Strand: Direct
Name: yggG [H]
Synonym: Dtpsy_0218
Alternate gene names: 222109439
Gene position: 238913-239848 (Clockwise)
Preceding gene: 222109438
Following gene: 222109444
Centisome position: 6.29
GC content: 71.26
Gene sequence:
>936_bases GTGGCGCTGTGCCTGCCCGCCTACATGCAGGCGGTGACGCGCGCCGCTAGACTGCTGCCCATGAACAGCCCCACCGTCTC TGTGCCCCCGTTGCCCGTGGATGCGGGCTGCCGTTGCTGCGCCGCGCGGGGCGGCACCTGGCAGGCGCGCCGCGCCTTCG TGCTGGCGGCGGCTGGTACGCTCGTGCTGCCGGCCGCGGCGCAGGTGGAGGTGGGGTCGGCCTCGGGCATGCGCCGGCTG GTGCCGGCCGAGACGCTGGAGGACTCCGCTGTCCAGCAGTACAGCCAGCTACTGGCGCAGGCCAAGGCCAAGCGCGCACT GGCGCCGGACAACCACCCCCAGTTGCTCAAGCTGCGCGCGATCGCGCGGCAGATCATTCCGTACGCCGCGCAGTGGAACA GCCGCGCCGCGCAGTGGCGCTGGGAGGTCAACCTGATCGGCAGCAAGCAGATCAACGCCTTCTGCATGCCCGGCGGCAAG ATCGCGTTCTACACGGGCATCCTGGACCAGCTCAAGCTGACCGACGACGAGATCGCCATGGTCATGGGCCATGAGATGGC CCACGCGCTGCGCGAGCATGCGCGCTCGCGCGTGGCCAAGAGCCAGGCCACCAGCATCGGCCTGTCGCTGGGCGCGCAGC TGCTGGGCCTGGGCGATCTGGGCAATGCAGCCGCCAACCTGGGGACGCAGCTGCTCACGCTCAAGTTCAGCCGCTCCGAC GAGACCGACGCGGACCTGGTCGGCCTGGAGCTGGCCGCCCGCGCGGGCTACAACCCCCAGGCCGCCGTGAGCCTGTGGCG CAAGATGGGCGAGGCCACGGGCAACGGCGGCATCGCGTTCCTGTCCACCCACCCGTCGGGGCCCGACCGCATCCGCGAGC TGGAGCAGAACGTGCCCAAGGTGCAGGGGCTGTACCAGGCATCGCGGCGCGGTTAA
Upstream 100 bases:
>100_bases GCGCAAGCGCCATCACAAGGAACAGAAGAAGGCATACAAGCGCTGGCGCCGCGAATGGGAAGACAACGACGATTGACCCG GGCATGTTCCGGCTGCCATC
Downstream 100 bases:
>100_bases TGCTATTAAAAATATAGCTGTTAGCGCTTATGGAATAAGCGCTGGAGCTTTTTTGATTCGGATTCTTTCCTGCGCCTGGG CGCGGACCAGACGCTGTCCC
Product: peptidase m48 ste24p
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 311; Mature: 310
Protein sequence:
>311_residues MALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGTLVLPAAAQVEVGSASGMRRL VPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRAIARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGK IAFYTGILDQLKLTDDEIAMVMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPKVQGLYQASRRG
Sequences:
>Translated_311_residues MALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGTLVLPAAAQVEVGSASGMRRL VPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRAIARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGK IAFYTGILDQLKLTDDEIAMVMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPKVQGLYQASRRG >Mature_310_residues ALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGTLVLPAAAQVEVGSASGMRRLV PAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRAIARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGKI AFYTGILDQLKLTDDEIAMVMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSDE TDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPKVQGLYQASRRG
Specific function: Seems to regulate the expression of speB [H]
COG id: COG0501
COG function: function code O; Zn-dependent protease with chaperone function
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase M48B family [H]
Homologues:
Organism=Escherichia coli, GI87082185, Length=224, Percent_Identity=26.3392857142857, Blast_Score=72, Evalue=6e-14, Organism=Saccharomyces cerevisiae, GI6322940, Length=275, Percent_Identity=27.2727272727273, Blast_Score=101, Evalue=2e-22,
Paralogues:
None
Copy number: 10-20 Molecules/Cell [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001915 [H]
Pfam domain/function: PF01435 Peptidase_M48 [H]
EC number: 3.4.24.- [C]
Molecular weight: Translated: 33214; Mature: 33082
Theoretical pI: Translated: 10.01; Mature: 10.01
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGT CCEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEECCCCCCCHHHHEEEEEECCC LVLPAAAQVEVGSASGMRRLVPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRA EEECCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH IARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGKIAFYTGILDQLKLTDDEIAM HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHCCCHHHHH VMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCC ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPK CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCHH VQGLYQASRRG HHHHHHHHCCC >Mature Secondary Structure ALCLPAYMQAVTRAARLLPMNSPTVSVPPLPVDAGCRCCAARGGTWQARRAFVLAAAGT CEEHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCCEECCCCCCCHHHHEEEEEECCC LVLPAAAQVEVGSASGMRRLVPAETLEDSAVQQYSQLLAQAKAKRALAPDNHPQLLKLRA EEECCCCEEEECCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHH IARQIIPYAAQWNSRAAQWRWEVNLIGSKQINAFCMPGGKIAFYTGILDQLKLTDDEIAM HHHHHHHHHHHCCCCCEEEEEEEEEECCCCCCEEECCCCCEEEHHHHHHHHHCCCHHHHH VMGHEMAHALREHARSRVAKSQATSIGLSLGAQLLGLGDLGNAAANLGTQLLTLKFSRSD HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCEEEEEEECCCC ETDADLVGLELAARAGYNPQAAVSLWRKMGEATGNGGIAFLSTHPSGPDRIRELEQNVPK CCCHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHCCHH VQGLYQASRRG HHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: Zn [C]
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 2153656; 9278503; 1310091 [H]