| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is braD [H]
Identifier: 222109394
GI number: 222109394
Start: 194448
End: 196355
Strand: Direct
Name: braD [H]
Synonym: Dtpsy_0173
Alternate gene names: 222109394
Gene position: 194448-196355 (Clockwise)
Preceding gene: 222109393
Following gene: 222109395
Centisome position: 5.12
GC content: 71.38
Gene sequence:
>1908_bases ATGGATGTTTCGGGGCTGCTGGCCCAACTGCTCAATGGCCTGGCGGGCGCTTCCACGTTGTTCCTCGTGGCGGCGGGGCT GTCGCTGATCTTTGGGGTGATGCGCATCGTCAACTTCGCGCACGGCTCGTTTTACATGCTGGGCCTGTACCTGGCCTATG CCCTGGTGGAGCGTCTGGGCGATGCCCTCGGCTTCTGGCCTGCGCTGCTGCTGGCTCCGCTGGCCGTGGGCCTGCTGGGC GCGGCGGTGGAGGTGCTGCTGCTGCGCCGCATCTACCGCGCACCCGAACTGCTGCAGCTGCTGGCCACCTTCGCCTTGGT GCTGGTGATCAAGGACGCGGCGCTGTGGCTCTGGGGGCCGGAGGAGCTGTTCGGCCCGCGTGCGCCGGGCCTGGAGGGCG CGGTGGACCTGCTGGGCCGGCGCTTCCCAGCCTACGACCTGTTCCTCATTGCCGTGGGGCCGCTGGTGCTGGTGCTGCTC ACGCTGCTGCTCACGCGCACGCGCTGGGGCACGCTGGTGCGCGCCGCCACGCAGGACCGTGAGATGGTCGGTGCGCTGGG TGTGAACCAGGCCTGGCTGTTCACCAGCGTGTTCGCGCTGGGGGCCCTGCTGGCAGGCCTGGGCGGCGCGCTGCAGCTGC CGCGCGAGCCCGCCAGCCTGGAGCTGGACATGCTCACCATCGGCGCCGCCTTCGTGGTAGTGGTGGTGGGCGGCATGGGC TCGCTGCCCGGCGCCTTCGTGGCGGCGTTGGTGATTGCCGAGCTCAAGGCCGTGTGCATCTGGCTGGGCGTGGTCGAGGT CGCGGGGGTGGAGGTGGCCTTTCCCCGGCTCACGCTGGTGGTGGAGTTCCTGGTGATGGCGGCCGTGCTCATCTGGCGGC CCTGGGGCTTCATGGGCCGCCCGCAGGCCGTGGCGCGTGGCGTGGGCACGCCCGAGGCGCCGCTGCGCCAGGCGGGGCAG GGCGCCACGGCCGCCTGGTGCGCGTTGGTGCTGGCCCTGGCGCTGCTGCCGCTGGCGGTGGAGCCGGGCAGCTACGCCAC CGTGTTGCTGACCGACATCGCGATTGCCGCGCTGTTCGCCGCCAGCCTGCATTGCATCCTGGGGCCGGGCGGGCTGCATT CGTTCGGCCATGCGGCGTACTTCGGCCTGGGCGCCTACGGCGCGGCGCTGCTGGTGCGCTGGCTGGACTGGCCCATGGGC ATGGCGCTGCTGCTGGGGCCGCTGGTGGCGGCGGCCGGCGCGCTGGTGTACGGCTGGTTCTGCGTGCGCCTGTCGGGCGT GTCGCTCACCATGCTGACGCTGGCGTTCGCACAGATCACCTGGGCCATCGCCTACCAGTGGGACGGGTTCACCGGCGGCA GCAACGGCATCACCGGCGTGTGGCCGCCGCAGTGGGCCGCGCAGGGCGCGGGCTTCTATTGGCTGGTGCTGGCGCTGGCC GTGGCGGGCATCTACCTGCTGCGGCGCATGCTGTTTGCACCGCTGGGCTGGGCGCTGCGCGCGGCGCGCGACTCGGCGCT GCGGGCCGACGCCATTGGCATCGACGTGCGCGGCGTGCAGTGGGCCGCCTTTGTGGTGGCAGGGCTGCTGGCCGGTCTGG CGGGGGCGCTGTACGTGTTTTCCAAAGGCAGCGTGGCGCCCGATGCGCTGGGCGTGTCGCGCTCGGTGGACGGGCTGGTG ATGGTGCTGCTGGGCGGCATGCAGCAGCTGGCCGGGCCGGTGGTGGGCGCGGGCGTGTTCACCTGGCTGCACGACACCGT GGCGCGCAGTACCGACTACTGGCGCGCGCTGCTGGGCGGCATCATGCTGCTGCTGGTGCTGCTGTTTCCTCAAGGAATTT CGGGGTTTGCGCAGGTGTGGAAAGCGCTGGCAGCTATCAAAAACAAAGCACAGGAGGGCGCGCCGTGA
Upstream 100 bases:
>100_bases GGGGAACGCGCGGCCGCTACCGCGGGGCGACCCGGGCGCTATGGCTGCGGGCTTCAACCGCGCGGGCTGCGGTGGCCCTG TGCGGCATTGGACGACTGAC
Downstream 100 bases:
>100_bases GCCTGCTGCAGGTCCAGGAGCTGCGCAAGTCCTTCGGCGGAGTGCAGGCCGTGCAGGGCGTGTCGTTCGCACTGCAGGCC GGCGAGTTGCTGGCGCTGAT
Product: inner-membrane translocator
Products: ADP; phosphate; L-valine [Cytoplasm]; ADP; L-iso-leucine [Cytoplasm]; L-leucine [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 635; Mature: 635
Protein sequence:
>635_residues MDVSGLLAQLLNGLAGASTLFLVAAGLSLIFGVMRIVNFAHGSFYMLGLYLAYALVERLGDALGFWPALLLAPLAVGLLG AAVEVLLLRRIYRAPELLQLLATFALVLVIKDAALWLWGPEELFGPRAPGLEGAVDLLGRRFPAYDLFLIAVGPLVLVLL TLLLTRTRWGTLVRAATQDREMVGALGVNQAWLFTSVFALGALLAGLGGALQLPREPASLELDMLTIGAAFVVVVVGGMG SLPGAFVAALVIAELKAVCIWLGVVEVAGVEVAFPRLTLVVEFLVMAAVLIWRPWGFMGRPQAVARGVGTPEAPLRQAGQ GATAAWCALVLALALLPLAVEPGSYATVLLTDIAIAALFAASLHCILGPGGLHSFGHAAYFGLGAYGAALLVRWLDWPMG MALLLGPLVAAAGALVYGWFCVRLSGVSLTMLTLAFAQITWAIAYQWDGFTGGSNGITGVWPPQWAAQGAGFYWLVLALA VAGIYLLRRMLFAPLGWALRAARDSALRADAIGIDVRGVQWAAFVVAGLLAGLAGALYVFSKGSVAPDALGVSRSVDGLV MVLLGGMQQLAGPVVGAGVFTWLHDTVARSTDYWRALLGGIMLLLVLLFPQGISGFAQVWKALAAIKNKAQEGAP
Sequences:
>Translated_635_residues MDVSGLLAQLLNGLAGASTLFLVAAGLSLIFGVMRIVNFAHGSFYMLGLYLAYALVERLGDALGFWPALLLAPLAVGLLG AAVEVLLLRRIYRAPELLQLLATFALVLVIKDAALWLWGPEELFGPRAPGLEGAVDLLGRRFPAYDLFLIAVGPLVLVLL TLLLTRTRWGTLVRAATQDREMVGALGVNQAWLFTSVFALGALLAGLGGALQLPREPASLELDMLTIGAAFVVVVVGGMG SLPGAFVAALVIAELKAVCIWLGVVEVAGVEVAFPRLTLVVEFLVMAAVLIWRPWGFMGRPQAVARGVGTPEAPLRQAGQ GATAAWCALVLALALLPLAVEPGSYATVLLTDIAIAALFAASLHCILGPGGLHSFGHAAYFGLGAYGAALLVRWLDWPMG MALLLGPLVAAAGALVYGWFCVRLSGVSLTMLTLAFAQITWAIAYQWDGFTGGSNGITGVWPPQWAAQGAGFYWLVLALA VAGIYLLRRMLFAPLGWALRAARDSALRADAIGIDVRGVQWAAFVVAGLLAGLAGALYVFSKGSVAPDALGVSRSVDGLV MVLLGGMQQLAGPVVGAGVFTWLHDTVARSTDYWRALLGGIMLLLVLLFPQGISGFAQVWKALAAIKNKAQEGAP >Mature_635_residues MDVSGLLAQLLNGLAGASTLFLVAAGLSLIFGVMRIVNFAHGSFYMLGLYLAYALVERLGDALGFWPALLLAPLAVGLLG AAVEVLLLRRIYRAPELLQLLATFALVLVIKDAALWLWGPEELFGPRAPGLEGAVDLLGRRFPAYDLFLIAVGPLVLVLL TLLLTRTRWGTLVRAATQDREMVGALGVNQAWLFTSVFALGALLAGLGGALQLPREPASLELDMLTIGAAFVVVVVGGMG SLPGAFVAALVIAELKAVCIWLGVVEVAGVEVAFPRLTLVVEFLVMAAVLIWRPWGFMGRPQAVARGVGTPEAPLRQAGQ GATAAWCALVLALALLPLAVEPGSYATVLLTDIAIAALFAASLHCILGPGGLHSFGHAAYFGLGAYGAALLVRWLDWPMG MALLLGPLVAAAGALVYGWFCVRLSGVSLTMLTLAFAQITWAIAYQWDGFTGGSNGITGVWPPQWAAQGAGFYWLVLALA VAGIYLLRRMLFAPLGWALRAARDSALRADAIGIDVRGVQWAAFVVAGLLAGLAGALYVFSKGSVAPDALGVSRSVDGLV MVLLGGMQQLAGPVVGAGVFTWLHDTVARSTDYWRALLGGIMLLLVLLFPQGISGFAQVWKALAAIKNKAQEGAP
Specific function: Component of the high affinity leucine, isoleucine, valine, transport system (LIV-I), which is operative without Na(+) and is specific for alanine and threonine, in addition to branched-chain amino acids [H]
COG id: COG0559
COG function: function code E; Branched-chain amino acid ABC-type transport system, permease components
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the binding-protein-dependent transport system permease family. LivHM subfamily [H]
Homologues:
Organism=Escherichia coli, GI1789865, Length=324, Percent_Identity=26.2345679012346, Blast_Score=94, Evalue=2e-20, Organism=Escherichia coli, GI1789866, Length=317, Percent_Identity=24.2902208201893, Blast_Score=76, Evalue=6e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001851 [H]
Pfam domain/function: PF02653 BPD_transp_2 [H]
EC number: NA
Molecular weight: Translated: 66547; Mature: 66547
Theoretical pI: Translated: 8.29; Mature: 8.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 2.4 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDVSGLLAQLLNGLAGASTLFLVAAGLSLIFGVMRIVNFAHGSFYMLGLYLAYALVERLG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH DALGFWPALLLAPLAVGLLGAAVEVLLLRRIYRAPELLQLLATFALVLVIKDAALWLWGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECH EELFGPRAPGLEGAVDLLGRRFPAYDLFLIAVGPLVLVLLTLLLTRTRWGTLVRAATQDR HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EMVGALGVNQAWLFTSVFALGALLAGLGGALQLPREPASLELDMLTIGAAFVVVVVGGMG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCC SLPGAFVAALVIAELKAVCIWLGVVEVAGVEVAFPRLTLVVEFLVMAAVLIWRPWGFMGR CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PQAVARGVGTPEAPLRQAGQGATAAWCALVLALALLPLAVEPGSYATVLLTDIAIAALFA CHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ASLHCILGPGGLHSFGHAAYFGLGAYGAALLVRWLDWPMGMALLLGPLVAAAGALVYGWF HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CVRLSGVSLTMLTLAFAQITWAIAYQWDGFTGGSNGITGVWPPQWAAQGAGFYWLVLALA HHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH VAGIYLLRRMLFAPLGWALRAARDSALRADAIGIDVRGVQWAAFVVAGLLAGLAGALYVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHH SKGSVAPDALGVSRSVDGLVMVLLGGMQQLAGPVVGAGVFTWLHDTVARSTDYWRALLGG CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHH IMLLLVLLFPQGISGFAQVWKALAAIKNKAQEGAP HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC >Mature Secondary Structure MDVSGLLAQLLNGLAGASTLFLVAAGLSLIFGVMRIVNFAHGSFYMLGLYLAYALVERLG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH DALGFWPALLLAPLAVGLLGAAVEVLLLRRIYRAPELLQLLATFALVLVIKDAALWLWGP HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHEEECH EELFGPRAPGLEGAVDLLGRRFPAYDLFLIAVGPLVLVLLTLLLTRTRWGTLVRAATQDR HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH EMVGALGVNQAWLFTSVFALGALLAGLGGALQLPREPASLELDMLTIGAAFVVVVVGGMG HHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHCCCC SLPGAFVAALVIAELKAVCIWLGVVEVAGVEVAFPRLTLVVEFLVMAAVLIWRPWGFMGR CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC PQAVARGVGTPEAPLRQAGQGATAAWCALVLALALLPLAVEPGSYATVLLTDIAIAALFA CHHHHCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH ASLHCILGPGGLHSFGHAAYFGLGAYGAALLVRWLDWPMGMALLLGPLVAAAGALVYGWF HHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CVRLSGVSLTMLTLAFAQITWAIAYQWDGFTGGSNGITGVWPPQWAAQGAGFYWLVLALA HHHHCCCHHHHHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH VAGIYLLRRMLFAPLGWALRAARDSALRADAIGIDVRGVQWAAFVVAGLLAGLAGALYVF HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHH SKGSVAPDALGVSRSVDGLVMVLLGGMQQLAGPVVGAGVFTWLHDTVARSTDYWRALLGG CCCCCCCHHHCCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHHHHH IMLLLVLLFPQGISGFAQVWKALAAIKNKAQEGAP HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; L-valine [Periplasm]; H2O; ATP; L-iso-leucine [Periplasm]; L-leucine [Periplasm] [C]
Specific reaction: ATP + L-valine [Periplasm] + H2O = ADP + phosphate + L-valine [Cytoplasm] ATP + L-iso-leucine [Periplasm] + H2O = ADP + phosphate + L-iso-leucine [Cytoplasm] ATP + L-leucine [Periplasm] + H2O = ADP + phosphate + L-leucine [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2120183; 10984043; 2509433 [H]