| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222109368
Identifier: 222109368
GI number: 222109368
Start: 165132
End: 166340
Strand: Direct
Name: 222109368
Synonym: Dtpsy_0147
Alternate gene names: NA
Gene position: 165132-166340 (Clockwise)
Preceding gene: 222109367
Following gene: 222109369
Centisome position: 4.35
GC content: 70.72
Gene sequence:
>1209_bases ATGAGCCGCGTTCCGCAATCCCCCCTGGACGCCGCCGCCGTGAACCGGCCGCTGCGCGGCCGCGCAGCCATCGTCGGCGC CGCCACCTACGGCTGCGGCGAGGCGCCCGGCATGGACGACATGACGCTGCTGGTGCGTGCAGCACACGCGGCCGTGGCCG ACGCGGGGCTGACCATGCAGGACATCGACGGCCTGGCCACCTGCAGTGTGAACGCCAGCATGTGGACCATGCCGGTGATC GAACACCTCGGCATCAACCCGACCTATGTGGACGGCACGATGATCGGTGGCTCCAGCTTCATCGCCCACCTGCTGCCCGC CATCCGCGCGCTGGAGGCCGGGCAGTGCAAGGCCGTGCTGGTGTGCTACGGCAGCGCGCAGCGCTCGGCCACCTTCGGGC GCAAGGAAAGCGTGGCCGCACGCCGCTTCCTGGACCCGCAGCCGTACGAATTCCCGTATGAGCCGGTGCTGCCCGTGTCC GCCTATGCGCTGGCCGCCGCGCGCCACATGCACGAATTCGGCACCACGCGCGAACAACTGGCCGAGGTGGCCGTGGCCGC ACGTGCCTGGGCGCAGCAGAACCCCGAGGCGTTCATGCGCGACCCGCTCACCATCGAGGATGTGCTGGCGGCCCGGCCGA TCGCCAGCCCGCTCACCGTGCGCGACTGCTGCCTGGTGACGGACGGTGGCGGCGCTCTCGTGCTCACCCGCGCCGAGCGC GCGCGCGACCTGCCCAACCCGCCCGTCTATGTGCTGGGCAATGCCACGGCCATCTGGAACCGCCAGATCTCCTGCATGCC CGACCTGACGACCACCGCGGCAGCGCAGTCGGGCGCCCAGGCCTTCGCGATGGCGGGTTTGCAGGCCAAAGACATGGACA TGGCCCAGGTGTACGACGCTTTCACCATCAACACCCTGCTGTTCCTGGAAGACCTGGGCTTCTGTGCCAAGGGCGAGGCC GGCGCCTTCGTGCAGAACGGCGGCATCGCGCCCGGCGGGCGCCTGGCCGTGAACACCAACGGCGGCGGCCTGTCGTGCGT GCACCCGGGCATGTACGGCATCTTTGCGCTGATCGAGGCCGTGCGCCAGCTGCGCGGCGAGGCCGGCGCGCGCCAGCTAT CGCGTCATGACACCGCCGTGGTGCATGGCAACGGCGGCACGCTGTCCAGCCAGTCCACCGCCGTGCTCGGCACCGCCGAC ACCCTCTGA
Upstream 100 bases:
>100_bases CCGAAGACGTGCGCATCGGCCAGCGGGTGCAGGCCCGCGTGGCGCAGAAGGACGGGCGTGGCCTGGTGCTGTTCCAGCCC GCAGCGCAAGGGGGTGCCGC
Downstream 100 bases:
>100_bases ACCCGCATACCGAAGAAAGAACCCTCATGATCCGCGACCCAGACATCTTGGAAGCCCTGCTCGACAGCGTGCGCCGCTTT GTGCGAGAACGCCTGGTGCC
Product: thiolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MSRVPQSPLDAAAVNRPLRGRAAIVGAATYGCGEAPGMDDMTLLVRAAHAAVADAGLTMQDIDGLATCSVNASMWTMPVI EHLGINPTYVDGTMIGGSSFIAHLLPAIRALEAGQCKAVLVCYGSAQRSATFGRKESVAARRFLDPQPYEFPYEPVLPVS AYALAAARHMHEFGTTREQLAEVAVAARAWAQQNPEAFMRDPLTIEDVLAARPIASPLTVRDCCLVTDGGGALVLTRAER ARDLPNPPVYVLGNATAIWNRQISCMPDLTTTAAAQSGAQAFAMAGLQAKDMDMAQVYDAFTINTLLFLEDLGFCAKGEA GAFVQNGGIAPGGRLAVNTNGGGLSCVHPGMYGIFALIEAVRQLRGEAGARQLSRHDTAVVHGNGGTLSSQSTAVLGTAD TL
Sequences:
>Translated_402_residues MSRVPQSPLDAAAVNRPLRGRAAIVGAATYGCGEAPGMDDMTLLVRAAHAAVADAGLTMQDIDGLATCSVNASMWTMPVI EHLGINPTYVDGTMIGGSSFIAHLLPAIRALEAGQCKAVLVCYGSAQRSATFGRKESVAARRFLDPQPYEFPYEPVLPVS AYALAAARHMHEFGTTREQLAEVAVAARAWAQQNPEAFMRDPLTIEDVLAARPIASPLTVRDCCLVTDGGGALVLTRAER ARDLPNPPVYVLGNATAIWNRQISCMPDLTTTAAAQSGAQAFAMAGLQAKDMDMAQVYDAFTINTLLFLEDLGFCAKGEA GAFVQNGGIAPGGRLAVNTNGGGLSCVHPGMYGIFALIEAVRQLRGEAGARQLSRHDTAVVHGNGGTLSSQSTAVLGTAD TL >Mature_401_residues SRVPQSPLDAAAVNRPLRGRAAIVGAATYGCGEAPGMDDMTLLVRAAHAAVADAGLTMQDIDGLATCSVNASMWTMPVIE HLGINPTYVDGTMIGGSSFIAHLLPAIRALEAGQCKAVLVCYGSAQRSATFGRKESVAARRFLDPQPYEFPYEPVLPVSA YALAAARHMHEFGTTREQLAEVAVAARAWAQQNPEAFMRDPLTIEDVLAARPIASPLTVRDCCLVTDGGGALVLTRAERA RDLPNPPVYVLGNATAIWNRQISCMPDLTTTAAAQSGAQAFAMAGLQAKDMDMAQVYDAFTINTLLFLEDLGFCAKGEAG AFVQNGGIAPGGRLAVNTNGGGLSCVHPGMYGIFALIEAVRQLRGEAGARQLSRHDTAVVHGNGGTLSSQSTAVLGTADT L
Specific function: Unknown
COG id: COG0183
COG function: function code I; Acetyl-CoA acetyltransferase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI302344760, Length=248, Percent_Identity=28.6290322580645, Blast_Score=102, Evalue=7e-22, Organism=Homo sapiens, GI19923233, Length=248, Percent_Identity=28.6290322580645, Blast_Score=102, Evalue=9e-22, Organism=Homo sapiens, GI302344767, Length=248, Percent_Identity=28.6290322580645, Blast_Score=102, Evalue=9e-22, Organism=Homo sapiens, GI302344762, Length=248, Percent_Identity=28.6290322580645, Blast_Score=101, Evalue=1e-21, Organism=Homo sapiens, GI55956775, Length=211, Percent_Identity=26.5402843601896, Blast_Score=85, Evalue=1e-16, Organism=Caenorhabditis elegans, GI17537653, Length=393, Percent_Identity=23.9185750636132, Blast_Score=91, Evalue=8e-19, Organism=Drosophila melanogaster, GI19921506, Length=234, Percent_Identity=29.4871794871795, Blast_Score=100, Evalue=2e-21, Organism=Drosophila melanogaster, GI24585051, Length=234, Percent_Identity=29.4871794871795, Blast_Score=99, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002155 - InterPro: IPR016039 - InterPro: IPR016038 - InterPro: IPR020617 - InterPro: IPR020616 [H]
Pfam domain/function: PF02803 Thiolase_C; PF00108 Thiolase_N [H]
EC number: NA
Molecular weight: Translated: 42085; Mature: 41954
Theoretical pI: Translated: 5.86; Mature: 5.86
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 3.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 5.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSRVPQSPLDAAAVNRPLRGRAAIVGAATYGCGEAPGMDDMTLLVRAAHAAVADAGLTMQ CCCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH DIDGLATCSVNASMWTMPVIEHLGINPTYVDGTMIGGSSFIAHLLPAIRALEAGQCKAVL HCCCEEEEECCCCHHHHHHHHHCCCCCEEECCEEECHHHHHHHHHHHHHHHCCCCCCEEE VCYGSAQRSATFGRKESVAARRFLDPQPYEFPYEPVLPVSAYALAAARHMHEFGTTREQL EEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH AEVAVAARAWAQQNPEAFMRDPLTIEDVLAARPIASPLTVRDCCLVTDGGGALVLTRAER HHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEECHH ARDLPNPPVYVLGNATAIWNRQISCMPDLTTTAAAQSGAQAFAMAGLQAKDMDMAQVYDA HCCCCCCCEEEEECCEEEECCCEECCCCCHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHH FTINTLLFLEDLGFCAKGEAGAFVQNGGIAPGGRLAVNTNGGGLSCVHPGMYGIFALIEA HHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHH VRQLRGEAGARQLSRHDTAVVHGNGGTLSSQSTAVLGTADTL HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCC >Mature Secondary Structure SRVPQSPLDAAAVNRPLRGRAAIVGAATYGCGEAPGMDDMTLLVRAAHAAVADAGLTMQ CCCCCCCCCHHHHCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCHH DIDGLATCSVNASMWTMPVIEHLGINPTYVDGTMIGGSSFIAHLLPAIRALEAGQCKAVL HCCCEEEEECCCCHHHHHHHHHCCCCCEEECCEEECHHHHHHHHHHHHHHHCCCCCCEEE VCYGSAQRSATFGRKESVAARRFLDPQPYEFPYEPVLPVSAYALAAARHMHEFGTTREQL EEECCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHH AEVAVAARAWAQQNPEAFMRDPLTIEDVLAARPIASPLTVRDCCLVTDGGGALVLTRAER HHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHCCCCCCCEEEEEEEEECCCCEEEEEECHH ARDLPNPPVYVLGNATAIWNRQISCMPDLTTTAAAQSGAQAFAMAGLQAKDMDMAQVYDA HCCCCCCCEEEEECCEEEECCCEECCCCCHHHHHHHCCCHHHHHCCCCCCCCHHHHHHHH FTINTLLFLEDLGFCAKGEAGAFVQNGGIAPGGRLAVNTNGGGLSCVHPGMYGIFALIEA HHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCEEEEECCCCCEEEECCHHHHHHHHHHH VRQLRGEAGARQLSRHDTAVVHGNGGTLSSQSTAVLGTADTL HHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9371463 [H]