| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is 222109364
Identifier: 222109364
GI number: 222109364
Start: 161170
End: 162144
Strand: Direct
Name: 222109364
Synonym: Dtpsy_0143
Alternate gene names: NA
Gene position: 161170-162144 (Clockwise)
Preceding gene: 222109363
Following gene: 222109365
Centisome position: 4.25
GC content: 67.18
Gene sequence:
>975_bases ATGCCCGCTTCCCGTCGTCTCGCCACGGCCGCCCTGGCCCTGGCGCCTTTCGCCTTCGCTCTGCCTGCCGCCGCGCAGGA CGGCCAGCCCGTGCGCCTCATCGTGGGCTATGCCGCGGGCGGCCCCGTGGACCAGGGGGCGCGCCTGTTCGCACCGGCGC TGTCCAAGGAACTGGGCATGCCGGTCATGGTGGAAAACAAGACCGGCGCCAACGCCACCATTGCCGGCAGCGAGGTAGTG CGGTCCAAGCCCGATGGCATGACGCTGTGGTTTGCCGCCAGCCCCACCATCACCATCAGCCCCAATGTGATGACCAAGAT GCCGTTCGACCCGGCCAAGGACCTGACGCCCGTGGCGCCCATCCTGAGCTACTACAACGTGCTGGTGGTGAACAACAACG AGCCCTACAAGAGCGTGCGCGAGCTGGTGGCCACCGCCAAGTCCAATCCGGGCAAGCTCGCCTACGGCTCGGCCGGTGTG GGCGGCTCCAACCATCTGGGCGCGCTGCTGTTCGCCAAGCGCAGCGGCATCGAGATGAACCACATCCCCTACAAGGGCAA CGCCCCGGCGATGACGGACGTGATCGGCGGCCAGCTCAACATGATGCTGGACATCATCAGCACCGCCAGCGCCTACATCC ACAGTGGCAAGGTGCGCGCCATTGCCGTCACCTCGCCGCAGCGCAATGCCTCGCTGCCGGACGTGCCCACGTTCGCCGAG TCGGGCATCGACGGCCTCAAGGGCTTCGACGTGGGTGGTTGGTACGGCGTCTATGGTCCCAAGGGCATGTCGCCCGAGCT GGTGGCCAAGCTCAACAAGGCCGTCAATGCCGCGTTGCAGCAACCCGATCTGAAGAAGCGGTACAAGGAGCTGGGCTACG ACGAGTGGACCGGCGCGCCGCAGAAGCTGGCCGAGCGCGGCGCCCAGGAGCGCGCCATGTGGGCCACGGTGACCCAGGGC ATCACCGTGGATTGA
Upstream 100 bases:
>100_bases CAGATTCCCAGCGTGCGCACCGGGCCGCACCATTGCTGCCAACGTGCTGGCCCTCCGCCCCAGCGGTGCCCGCGTTACCT ACAACATCAGGAGACACACC
Downstream 100 bases:
>100_bases GATGGCAGAGCGCATCCATCACCTGCTGGACCGCTGGCTGGCCGAGGCGCCCGCGCGGCCCTTCATTCATCTGCCGGACG GCCGCAGCCTGAGTTTTGCC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MPASRRLATAALALAPFAFALPAAAQDGQPVRLIVGYAAGGPVDQGARLFAPALSKELGMPVMVENKTGANATIAGSEVV RSKPDGMTLWFAASPTITISPNVMTKMPFDPAKDLTPVAPILSYYNVLVVNNNEPYKSVRELVATAKSNPGKLAYGSAGV GGSNHLGALLFAKRSGIEMNHIPYKGNAPAMTDVIGGQLNMMLDIISTASAYIHSGKVRAIAVTSPQRNASLPDVPTFAE SGIDGLKGFDVGGWYGVYGPKGMSPELVAKLNKAVNAALQQPDLKKRYKELGYDEWTGAPQKLAERGAQERAMWATVTQG ITVD
Sequences:
>Translated_324_residues MPASRRLATAALALAPFAFALPAAAQDGQPVRLIVGYAAGGPVDQGARLFAPALSKELGMPVMVENKTGANATIAGSEVV RSKPDGMTLWFAASPTITISPNVMTKMPFDPAKDLTPVAPILSYYNVLVVNNNEPYKSVRELVATAKSNPGKLAYGSAGV GGSNHLGALLFAKRSGIEMNHIPYKGNAPAMTDVIGGQLNMMLDIISTASAYIHSGKVRAIAVTSPQRNASLPDVPTFAE SGIDGLKGFDVGGWYGVYGPKGMSPELVAKLNKAVNAALQQPDLKKRYKELGYDEWTGAPQKLAERGAQERAMWATVTQG ITVD >Mature_323_residues PASRRLATAALALAPFAFALPAAAQDGQPVRLIVGYAAGGPVDQGARLFAPALSKELGMPVMVENKTGANATIAGSEVVR SKPDGMTLWFAASPTITISPNVMTKMPFDPAKDLTPVAPILSYYNVLVVNNNEPYKSVRELVATAKSNPGKLAYGSAGVG GSNHLGALLFAKRSGIEMNHIPYKGNAPAMTDVIGGQLNMMLDIISTASAYIHSGKVRAIAVTSPQRNASLPDVPTFAES GIDGLKGFDVGGWYGVYGPKGMSPELVAKLNKAVNAALQQPDLKKRYKELGYDEWTGAPQKLAERGAQERAMWATVTQGI TVD
Specific function: Unknown
COG id: COG3181
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0065 (bug) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005064 [H]
Pfam domain/function: PF03401 Bug [H]
EC number: NA
Molecular weight: Translated: 34084; Mature: 33952
Theoretical pI: Translated: 9.76; Mature: 9.76
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPASRRLATAALALAPFAFALPAAAQDGQPVRLIVGYAAGGPVDQGARLFAPALSKELGM CCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC PVMVENKTGANATIAGSEVVRSKPDGMTLWFAASPTITISPNVMTKMPFDPAKDLTPVAP CEEEECCCCCCEEECCHHHHHCCCCCEEEEEECCCEEEECCCEEEECCCCCCCCCCHHHH ILSYYNVLVVNNNEPYKSVRELVATAKSNPGKLAYGSAGVGGSNHLGALLFAKRSGIEMN HHHHCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEC HIPYKGNAPAMTDVIGGQLNMMLDIISTASAYIHSGKVRAIAVTSPQRNASLPDVPTFAE CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHH SGIDGLKGFDVGGWYGVYGPKGMSPELVAKLNKAVNAALQQPDLKKRYKELGYDEWTGAP CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCH QKLAERGAQERAMWATVTQGITVD HHHHHCCHHHHHHHHHHCCCCCCC >Mature Secondary Structure PASRRLATAALALAPFAFALPAAAQDGQPVRLIVGYAAGGPVDQGARLFAPALSKELGM CCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCC PVMVENKTGANATIAGSEVVRSKPDGMTLWFAASPTITISPNVMTKMPFDPAKDLTPVAP CEEEECCCCCCEEECCHHHHHCCCCCEEEEEECCCEEEECCCEEEECCCCCCCCCCHHHH ILSYYNVLVVNNNEPYKSVRELVATAKSNPGKLAYGSAGVGGSNHLGALLFAKRSGIEMN HHHHCEEEEECCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCCEEEEEECCCCCEEC HIPYKGNAPAMTDVIGGQLNMMLDIISTASAYIHSGKVRAIAVTSPQRNASLPDVPTFAE CCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHH SGIDGLKGFDVGGWYGVYGPKGMSPELVAKLNKAVNAALQQPDLKKRYKELGYDEWTGAP CCCCCCCCCCCCCEEECCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCH QKLAERGAQERAMWATVTQGITVD HHHHHCCHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 3299368 [H]