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The map label for this gene is yfdE [H]

Identifier: 222109350

GI number: 222109350

Start: 145314

End: 146426

Strand: Direct

Name: yfdE [H]

Synonym: Dtpsy_0129

Alternate gene names: 222109350

Gene position: 145314-146426 (Clockwise)

Preceding gene: 222109349

Following gene: 222109359

Centisome position: 3.83

GC content: 71.07

Gene sequence:

>1113_bases
GTGAAGGTTCTGGACAGCGTGCGCGTACTGGAGATTGGCGGCCTGGGGCCGGGGCCGTTTTGTGCGATGCACCTGGCCGA
CCTGGGTGCGGACGTCATTTCCGTAGTGCGCGAGACGAAGGGCCGCGAGACGACCGGCGCCTTGCTCAATCGCGGCAAGC
GCTCGGTGTTTGCCGACCTCAAGACCGAGGAGGGGCGCCAGTTGGTGCTGGCCCTGGTGGCCGAGGCCGATGCGCTCATC
GAGGGCATGCGCCCTGGCGTGATGGAGCGCCTGGGTCTGGGCCCCGAGGAGTGCATGGCGGTCAACCCGCGCCTGGTGTA
CGGGCGCATGACGGGCTGGGGCCAGAGCGGACCGTTGGCACCGCGTGCGGGGCACGACACGAACTATGCCGCCGTCAGCG
GCGCGCTGTGGGGCTGCAGTCCGGTGGGCGCGCGGCCCGTCTCGCCTTTCGCCGTGCTTGGCGACATCGGCGGCGGTGCC
ATGTACCTGATGACGGGGCTGCTGTCGGGCATCGTGCAGGCGCGCGCCACGGGCCGCGGCACGGTGGTGGACGCAGCCAT
CGTGGACGGCTCGGCCCATATGCTGAACCTGATGCTGAGTGCGCGCCAGAGCGGCCTGGTGGCCGATGTGCGCGGCCAGA
GCATCCACGACAGCGCGCCCTTCTACGACACCTATGTCTGCGCCGACGGCCATTACGTCACCGTGGGCGCTATCGAGCCG
CAGTTCTACACCCTGCTGCTGCAGGTGCTGGGGCTGGCCGAGGACCCCGATTTCACCGGGTCGCAATGGGACAAGGCCGC
CTGGCCGGTGCGGCGCGCGCGGCTGGCCGCGCTGTTCCTGGCGCAGCCGCGTGCGCACTGGCAGGCGCTGCTGGAGCCCA
CCGACGCCTGTTTTGGCGTCGTGCTCAGCCCCGTCGAGGCGGCGCAGCACCCGCACATGCGTGCGCGGGATGTGTATTCC
GAACGCCAGGGGGTGCTACAGGCGGCACCCGCGCCCCGCTTTGATGGTGCAGCCTACGAGCCGGGCGAGGCCTGCGCGCC
CGGCGCGCATACGCAGTCGGTCATGGAAGGCCTGGGCCAGTCCGGCGCGCGGGCCGTGTGGCGCCAGCGCTGA

Upstream 100 bases:

>100_bases
CTGCGCACGCTGGTGCGCTCGGTGGAGAGCGTGCTTGGGGCCTCCGGCCTCACCTGATACCCGCGCCCGCCACCCATACA
ACATCTACCAAGGAGACATC

Downstream 100 bases:

>100_bases
GCACGTTGCGCGGGGCAGTCTCCCGCGCGGCCCTGGTTACCGTTGCTGGAGCAGCGCGGACGCTGGCAGCAGCCTGAAGG
CCAGCGACGCCAGCGCCAGC

Product: l-carnitine dehydratase/bile acid-inducible protein f

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 370; Mature: 370

Protein sequence:

>370_residues
MKVLDSVRVLEIGGLGPGPFCAMHLADLGADVISVVRETKGRETTGALLNRGKRSVFADLKTEEGRQLVLALVAEADALI
EGMRPGVMERLGLGPEECMAVNPRLVYGRMTGWGQSGPLAPRAGHDTNYAAVSGALWGCSPVGARPVSPFAVLGDIGGGA
MYLMTGLLSGIVQARATGRGTVVDAAIVDGSAHMLNLMLSARQSGLVADVRGQSIHDSAPFYDTYVCADGHYVTVGAIEP
QFYTLLLQVLGLAEDPDFTGSQWDKAAWPVRRARLAALFLAQPRAHWQALLEPTDACFGVVLSPVEAAQHPHMRARDVYS
ERQGVLQAAPAPRFDGAAYEPGEACAPGAHTQSVMEGLGQSGARAVWRQR

Sequences:

>Translated_370_residues
MKVLDSVRVLEIGGLGPGPFCAMHLADLGADVISVVRETKGRETTGALLNRGKRSVFADLKTEEGRQLVLALVAEADALI
EGMRPGVMERLGLGPEECMAVNPRLVYGRMTGWGQSGPLAPRAGHDTNYAAVSGALWGCSPVGARPVSPFAVLGDIGGGA
MYLMTGLLSGIVQARATGRGTVVDAAIVDGSAHMLNLMLSARQSGLVADVRGQSIHDSAPFYDTYVCADGHYVTVGAIEP
QFYTLLLQVLGLAEDPDFTGSQWDKAAWPVRRARLAALFLAQPRAHWQALLEPTDACFGVVLSPVEAAQHPHMRARDVYS
ERQGVLQAAPAPRFDGAAYEPGEACAPGAHTQSVMEGLGQSGARAVWRQR
>Mature_370_residues
MKVLDSVRVLEIGGLGPGPFCAMHLADLGADVISVVRETKGRETTGALLNRGKRSVFADLKTEEGRQLVLALVAEADALI
EGMRPGVMERLGLGPEECMAVNPRLVYGRMTGWGQSGPLAPRAGHDTNYAAVSGALWGCSPVGARPVSPFAVLGDIGGGA
MYLMTGLLSGIVQARATGRGTVVDAAIVDGSAHMLNLMLSARQSGLVADVRGQSIHDSAPFYDTYVCADGHYVTVGAIEP
QFYTLLLQVLGLAEDPDFTGSQWDKAAWPVRRARLAALFLAQPRAHWQALLEPTDACFGVVLSPVEAAQHPHMRARDVYS
ERQGVLQAAPAPRFDGAAYEPGEACAPGAHTQSVMEGLGQSGARAVWRQR

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI42794625, Length=363, Percent_Identity=39.6694214876033, Blast_Score=248, Evalue=9e-66,
Organism=Homo sapiens, GI266456254, Length=363, Percent_Identity=39.6694214876033, Blast_Score=247, Evalue=1e-65,
Organism=Homo sapiens, GI266458393, Length=249, Percent_Identity=44.1767068273092, Blast_Score=203, Evalue=2e-52,
Organism=Homo sapiens, GI266458397, Length=246, Percent_Identity=43.9024390243902, Blast_Score=201, Evalue=1e-51,
Organism=Homo sapiens, GI300863128, Length=389, Percent_Identity=26.7352185089974, Blast_Score=140, Evalue=2e-33,
Organism=Homo sapiens, GI300863124, Length=344, Percent_Identity=27.906976744186, Blast_Score=137, Evalue=1e-32,
Organism=Homo sapiens, GI266458395, Length=131, Percent_Identity=49.618320610687, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI42822893, Length=131, Percent_Identity=49.618320610687, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI300863126, Length=389, Percent_Identity=25.706940874036, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI13376042, Length=344, Percent_Identity=24.7093023255814, Blast_Score=99, Evalue=9e-21,
Organism=Escherichia coli, GI87082093, Length=358, Percent_Identity=27.6536312849162, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI1788717, Length=213, Percent_Identity=30.9859154929577, Blast_Score=95, Evalue=8e-21,
Organism=Caenorhabditis elegans, GI115535051, Length=339, Percent_Identity=32.7433628318584, Blast_Score=172, Evalue=3e-43,
Organism=Caenorhabditis elegans, GI32564160, Length=336, Percent_Identity=31.547619047619, Blast_Score=163, Evalue=1e-40,
Organism=Drosophila melanogaster, GI24585488, Length=330, Percent_Identity=40, Blast_Score=234, Evalue=5e-62,
Organism=Drosophila melanogaster, GI24648431, Length=332, Percent_Identity=31.0240963855422, Blast_Score=119, Evalue=3e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 39163; Mature: 39163

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLDSVRVLEIGGLGPGPFCAMHLADLGADVISVVRETKGRETTGALLNRGKRSVFADL
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHEECC
KTEEGRQLVLALVAEADALIEGMRPGVMERLGLGPEECMAVNPRLVYGRMTGWGQSGPLA
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHEEECCEEEEEECCCCCCCCCCC
PRAGHDTNYAAVSGALWGCSPVGARPVSPFAVLGDIGGGAMYLMTGLLSGIVQARATGRG
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
TVVDAAIVDGSAHMLNLMLSARQSGLVADVRGQSIHDSAPFYDTYVCADGHYVTVGAIEP
CEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCH
QFYTLLLQVLGLAEDPDFTGSQWDKAAWPVRRARLAALFLAQPRAHWQALLEPTDACFGV
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHH
VLSPVEAAQHPHMRARDVYSERQGVLQAAPAPRFDGAAYEPGEACAPGAHTQSVMEGLGQ
HHHHHHHHCCCCHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
SGARAVWRQR
CHHHHHHCCC
>Mature Secondary Structure
MKVLDSVRVLEIGGLGPGPFCAMHLADLGADVISVVRETKGRETTGALLNRGKRSVFADL
CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHEECC
KTEEGRQLVLALVAEADALIEGMRPGVMERLGLGPEECMAVNPRLVYGRMTGWGQSGPLA
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHCCCHHHHEEECCEEEEEECCCCCCCCCCC
PRAGHDTNYAAVSGALWGCSPVGARPVSPFAVLGDIGGGAMYLMTGLLSGIVQARATGRG
CCCCCCCCHHHHHCCCCCCCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHCCCCC
TVVDAAIVDGSAHMLNLMLSARQSGLVADVRGQSIHDSAPFYDTYVCADGHYVTVGAIEP
CEEEEEEECCHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEECCCCEEEEEECCH
QFYTLLLQVLGLAEDPDFTGSQWDKAAWPVRRARLAALFLAQPRAHWQALLEPTDACFGV
HHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHCHHHHHHHH
VLSPVEAAQHPHMRARDVYSERQGVLQAAPAPRFDGAAYEPGEACAPGAHTQSVMEGLGQ
HHHHHHHHCCCCHHHHHHHHHHHCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCC
SGARAVWRQR
CHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]