| Definition | Acidovorax ebreus TPSY chromosome, complete genome. |
|---|---|
| Accession | NC_011992 |
| Length | 3,796,573 |
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The map label for this gene is yjjL [C]
Identifier: 222109280
GI number: 222109280
Start: 58178
End: 59425
Strand: Direct
Name: yjjL [C]
Synonym: Dtpsy_0055
Alternate gene names: 222109280
Gene position: 58178-59425 (Clockwise)
Preceding gene: 222109278
Following gene: 222109281
Centisome position: 1.53
GC content: 70.59
Gene sequence:
>1248_bases ATGCCCATGACGACTGCTGCCCCCACCCTGCGCCAGGACGCGCGCACCATTGGCCTGATCGGCCTTGCGCACGGCTCCTC GCACTTCTTTCACCTGCTGCTGCCGCCGCTGTTCCCGTTCCTGATCGCGGAGTTCGGCTACAGCTATTCCGAATTGGGGC TGCTGGTCTCGGTGTTCTTCGTGGTCTCCGGCGTGGGCCAGGCGCTGTCGGGCTTCCTGGTGGACCGCGTGGGCGCACGC CCGGTGCTGTTCGCCGCGCTGGCCAGCTTTGCGCTGGCGGGCCTCACCGCGGGCAGCGCCAGCGGCTACCTGGGCCTGGT GGTGGCGTCGGTGCTGGCGGGCCTGGGCAATGCGCCGTTCCACCCGGTGGACTTCACCATCCTCAACAAGCGCGTGTCGC CCGCGCGGCTGGGCCACGGCTTCTCGGTGCACGGCATCTCGGGCAACCTGGGCTGGGCCACCGCGCCGCTGTTCATGGCG GGCATCGCCACGGCCACGGGATCGTGGCGCATGGCCTGCCTGAGCGGCGGTGCGCTGGCCTTGGTGATACTGGCCATCAT GGTGTGGAACCGCGACGCGCTGGACGATCGCCAGGGCACCTGGGCGCATGCGCCGGCCAAGGGCGCCACGGGCAGCGCGC ACGCGCAGGAACACCCCATGGCCTTCCTCAAGCTCCCGGCCGTGTGGCTGTGCTTCTCGTTCTTCTTCTGGAGCACCTGC TCGCTCAGCGCCATCCAGAGCTTTGCCGCCCCGGCGCTGCAGCGGATGTACGACATGCCGCTGTCGCTGACCTCCATGGT GGTCACGGGCTACATGCTGTGCAGCGCCGTGGGCATGGTGATCGGGGGCTTCCTCGTGGGCCGCGTGGTGCGGCTGGAAA AGACCATCAGCATCTGCCTGATGGCCTCCGCCGCGCTGCTGGTGCTGGTGGGGCTGGGCGCACTTCCCGGCACGGTGGCG CTGGCCGTGGCGGCGCTGGCGGGCATGGGCGTGGGCATTGCCGGCCCGTCGCGCGACATGCTCATCAAGCGCGCCGCGCC CCCCGGCGCCACGGGCCGCGTGTACGGCACGGTGTATTCGGGGCTGGACCTGGGCTTTTCCGTCGCGGCGCCGTTGTTTG GCGTGCTGCTGGACCGGGGGCAAACCGCCGACATCTTCTACGGCTCGGCCCTGGCGCTGGTGCTGAGTGTGGTCTCGGCG GCCCTGGTGGGCGGTGGCGTGGCACGACGCCAGGCGCAGGCTGCGTGA
Upstream 100 bases:
>100_bases GCAGGCGGCGGGGCAGGGCGGGGAAGGGACGGGCTTGGCATGATCGCGACAGCAATTGGCCGACTATCGTATATCGGCCG CGGCTGCCTTGCCTAAGATC
Downstream 100 bases:
>100_bases CAGGTGCCGGGGGCTTCCAGCGCTTACGTAGCAAGCGCTAACAGCTATTGAAACAGGAGCGCTGGCGCGCCCTCCAGGGC AAGCCCTGCGCCGCGCATAC
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: Facilitator Superfamily Transporter; Facilitator Superfamily Protein; Fosmidomycin Resistance Protein; Multi Drug Efflux Transporter; Facilitator Superfamily Permease
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MPMTTAAPTLRQDARTIGLIGLAHGSSHFFHLLLPPLFPFLIAEFGYSYSELGLLVSVFFVVSGVGQALSGFLVDRVGAR PVLFAALASFALAGLTAGSASGYLGLVVASVLAGLGNAPFHPVDFTILNKRVSPARLGHGFSVHGISGNLGWATAPLFMA GIATATGSWRMACLSGGALALVILAIMVWNRDALDDRQGTWAHAPAKGATGSAHAQEHPMAFLKLPAVWLCFSFFFWSTC SLSAIQSFAAPALQRMYDMPLSLTSMVVTGYMLCSAVGMVIGGFLVGRVVRLEKTISICLMASAALLVLVGLGALPGTVA LAVAALAGMGVGIAGPSRDMLIKRAAPPGATGRVYGTVYSGLDLGFSVAAPLFGVLLDRGQTADIFYGSALALVLSVVSA ALVGGGVARRQAQAA
Sequences:
>Translated_415_residues MPMTTAAPTLRQDARTIGLIGLAHGSSHFFHLLLPPLFPFLIAEFGYSYSELGLLVSVFFVVSGVGQALSGFLVDRVGAR PVLFAALASFALAGLTAGSASGYLGLVVASVLAGLGNAPFHPVDFTILNKRVSPARLGHGFSVHGISGNLGWATAPLFMA GIATATGSWRMACLSGGALALVILAIMVWNRDALDDRQGTWAHAPAKGATGSAHAQEHPMAFLKLPAVWLCFSFFFWSTC SLSAIQSFAAPALQRMYDMPLSLTSMVVTGYMLCSAVGMVIGGFLVGRVVRLEKTISICLMASAALLVLVGLGALPGTVA LAVAALAGMGVGIAGPSRDMLIKRAAPPGATGRVYGTVYSGLDLGFSVAAPLFGVLLDRGQTADIFYGSALALVLSVVSA ALVGGGVARRQAQAA >Mature_414_residues PMTTAAPTLRQDARTIGLIGLAHGSSHFFHLLLPPLFPFLIAEFGYSYSELGLLVSVFFVVSGVGQALSGFLVDRVGARP VLFAALASFALAGLTAGSASGYLGLVVASVLAGLGNAPFHPVDFTILNKRVSPARLGHGFSVHGISGNLGWATAPLFMAG IATATGSWRMACLSGGALALVILAIMVWNRDALDDRQGTWAHAPAKGATGSAHAQEHPMAFLKLPAVWLCFSFFFWSTCS LSAIQSFAAPALQRMYDMPLSLTSMVVTGYMLCSAVGMVIGGFLVGRVVRLEKTISICLMASAALLVLVGLGALPGTVAL AVAALAGMGVGIAGPSRDMLIKRAAPPGATGRVYGTVYSGLDLGFSVAAPLFGVLLDRGQTADIFYGSALALVLSVVSAA LVGGGVARRQAQAA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Integral Membrane Protein [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 42642; Mature: 42510
Theoretical pI: Translated: 9.64; Mature: 9.64
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMTTAAPTLRQDARTIGLIGLAHGSSHFFHLLLPPLFPFLIAEFGYSYSELGLLVSVFF CCCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VVSGVGQALSGFLVDRVGARPVLFAALASFALAGLTAGSASGYLGLVVASVLAGLGNAPF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC HPVDFTILNKRVSPARLGHGFSVHGISGNLGWATAPLFMAGIATATGSWRMACLSGGALA CCCCHHEECCCCCHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCHHH LVILAIMVWNRDALDDRQGTWAHAPAKGATGSAHAQEHPMAFLKLPAVWLCFSFFFWSTC HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH SLSAIQSFAAPALQRMYDMPLSLTSMVVTGYMLCSAVGMVIGGFLVGRVVRLEKTISICL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MASAALLVLVGLGALPGTVALAVAALAGMGVGIAGPSRDMLIKRAAPPGATGRVYGTVYS HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCCEEEHHHH GLDLGFSVAAPLFGVLLDRGQTADIFYGSALALVLSVVSAALVGGGVARRQAQAA CHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC >Mature Secondary Structure PMTTAAPTLRQDARTIGLIGLAHGSSHFFHLLLPPLFPFLIAEFGYSYSELGLLVSVFF CCCCCCHHHHHHHHHEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH VVSGVGQALSGFLVDRVGARPVLFAALASFALAGLTAGSASGYLGLVVASVLAGLGNAPF HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCCCC HPVDFTILNKRVSPARLGHGFSVHGISGNLGWATAPLFMAGIATATGSWRMACLSGGALA CCCCHHEECCCCCHHHHCCCEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCHHH LVILAIMVWNRDALDDRQGTWAHAPAKGATGSAHAQEHPMAFLKLPAVWLCFSFFFWSTC HHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHHHHHHH SLSAIQSFAAPALQRMYDMPLSLTSMVVTGYMLCSAVGMVIGGFLVGRVVRLEKTISICL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MASAALLVLVGLGALPGTVALAVAALAGMGVGIAGPSRDMLIKRAAPPGATGRVYGTVYS HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCHHHHEEECCCCCCCCCEEEHHHH GLDLGFSVAAPLFGVLLDRGQTADIFYGSALALVLSVVSAALVGGGVARRQAQAA CHHCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA