Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

Click here to switch to the map view.

The map label for this gene is 222102929

Identifier: 222102929

GI number: 222102929

Start: 615296

End: 615505

Strand: Reverse

Name: 222102929

Synonym: Avi_7685

Alternate gene names: NA

Gene position: 615505-615296 (Counterclockwise)

Preceding gene: 222102930

Following gene: 222102928

Centisome position: 97.42

GC content: 60.0

Gene sequence:

>210_bases
CTGGCGGGCTGGGCAGCCCCATGCCGCAAGACGCGTGGTGGCCAGCCGCGCTATATTGATCTGGCGATCGAAACCACGCC
GATGCTGGGCATGAGATTCGAATTGTGTTTGCGCCAAGCCGAGGGTCTTTTGAACTCTGTTTTGGACATGATGGCGACGG
ATTTGGCTGTGCCCGAGCACACCACGCTGAGCCGGAGGGCCAGAATCTGA

Upstream 100 bases:

>100_bases
CGCATATCGGTAAGATGAAGTTGAAAGTGGCGAACTGGGCGGAATATGAAGCCGGCCTTCGCCGCGTGGCAGTTTAACCC
TTTGGATAGCGCCAGAAGCG

Downstream 100 bases:

>100_bases
GAGCCATCAGTCAGATGCAACGACCACCAGCCTTTGGCGACTGATCGGCGCGACAAACCGTCGAAAGCTCGGAAGCGGCC
CGGGGCACTGCGCCTCTCGG

Product: transposase

Products: NA

Alternate protein names: Transposase; Transposase IS4 Family Protein; ISSpo9 Transposase

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MAGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEHTTLSRRARI

Sequences:

>Translated_69_residues
MAGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEHTTLSRRARI
>Mature_68_residues
AGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEHTTLSRRARI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 7703; Mature: 7572

Theoretical pI: Translated: 8.80; Mature: 8.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
7.2 %Met     (Translated Protein)
10.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
5.9 %Met     (Mature Protein)
8.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEH
CCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TTLSRRARI
CCCHHCCCC
>Mature Secondary Structure 
AGWAAPCRKTRGGQPRYIDLAIETTPMLGMRFELCLRQAEGLLNSVLDMMATDLAVPEH
CCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
TTLSRRARI
CCCHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA