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The map label for this gene is yngJ [H]

Identifier: 222102894

GI number: 222102894

Start: 573139

End: 574389

Strand: Reverse

Name: yngJ [H]

Synonym: Avi_7637

Alternate gene names: 222102894

Gene position: 574389-573139 (Counterclockwise)

Preceding gene: 222102896

Following gene: 222102891

Centisome position: 90.92

GC content: 55.24

Gene sequence:

>1251_bases
ATGAGTATAGATTTCAACCTGAATGCGGACCAGATTGCCCTTCGCGATGGCGCGCGTGCCTTTGCCAACACAGTCCTGAA
GGGCGTTCGCAAGACAATCGCCCAATATTCTCGACCAGATGAACGCTTCTATGCAATCAAGCCATTCTTTGAACAGGGCG
TTCATGCTGGCTTTGTCAACGCTCTCCTTCCCAAGGAAGCGGGCGGCTCAGATATTCCCACCCTTGATTTTGCACTTGCG
GCGGAAGAGCTAACGTCAGTCGATGTTAACATTCCATCTGCACTTTTGGGCAGCGGCCTTTGCATCAAGCCGGTTGCGAT
GTTCGGAACCAAAGAGCAGAAAAAGCGATTGCTGACGGATTTTGCCGAGGATGGAACGCGGCTGGGAGCGTTGGCGTTCA
CGGAGGTTACGGGTGGCGCCAATTTCGATTCTCCCGATCCCCGTTTCGGTGTTAAGACCTCCGCTACCCTGGAAGGTGAT
GAGTGGGTGATCAACGGCGAAAAGCATTACACCACCAATGGTACCGGCTGGGACGGCAATAATTGCCACCTTTATGCCGT
CGTTTGCAGAACCGATCTGACCCGGAACGCCGAGGAATCACTTGCGGTCATCATGGTTCCGGGCAACACGCCCGGCGTTC
GGGTTGCGGGGCTCCTCGATACGGTCGGCCACCGGGCAACGATTTCTCCGCGGATGACCTTTGAGAACGTACGTGTGCCG
GTAAACAACATCCTGGGTGAGCCGGGCGACGGAATCAAAATCGTTTCCACGAATTTCGCCTGGACCGCCGCGCTGATCGG
TGCGGCCTGTGTTGGTGTCATGCGTGCCGCCTACGACTATGCCCTGCAATATGCGCGTGCTGACTCCCACTCCGGGCCAC
ATCCAATCATTGAATATCCGACGGTCGGCTATATGCTTGCCGACATGAAGATGAAGATAGAGGCCTGCCGTTACATGACG
TGGAAGGCGTGCCATCAATACGACCAGTCCAAAGGGGCGGAGCATGAACTGGCAGTGATGACAAAGGTCTTCTGCTCGGA
AACATGCGTCGACGTCGTCTACGATGCCATGCGGGTTGTTGGCGTAGACAGTTATACTGATATGCATCCGCTCGCAGAAC
TGATGAACGATGCGATGTGCTTCCCGCTTTATGACGGCGGCAACATGGGAGCTCGCCGACGCAATCTGCACAGCATCATC
AAGAGTTCTTCCTACAGTTCTCTGACGGCGCCTTACGCGACATTTGCCTGA

Upstream 100 bases:

>100_bases
TTCCGGGCTGAGGAGGAAATATGGTTTCGATGGACGTGTGCGGAGGCGAAGGTTCTCGCTGCCAGCGTCCATCAAAAAAC
AAACCAAAAGGGGAAATTCG

Downstream 100 bases:

>100_bases
ACGATAATCAAGCCTAGCGCAGCTTTGCCGTACAGCGGCAGAGCTGCGGTTCTGTTGCGGTCATCGCCTGTAATCGCGGG
GGGCAACGCCGAAACGTCGC

Product: Acyl-CoA dehydrogenase

Products: 2,3-dehydroacyl-CoA; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 416; Mature: 415

Protein sequence:

>416_residues
MSIDFNLNADQIALRDGARAFANTVLKGVRKTIAQYSRPDERFYAIKPFFEQGVHAGFVNALLPKEAGGSDIPTLDFALA
AEELTSVDVNIPSALLGSGLCIKPVAMFGTKEQKKRLLTDFAEDGTRLGALAFTEVTGGANFDSPDPRFGVKTSATLEGD
EWVINGEKHYTTNGTGWDGNNCHLYAVVCRTDLTRNAEESLAVIMVPGNTPGVRVAGLLDTVGHRATISPRMTFENVRVP
VNNILGEPGDGIKIVSTNFAWTAALIGAACVGVMRAAYDYALQYARADSHSGPHPIIEYPTVGYMLADMKMKIEACRYMT
WKACHQYDQSKGAEHELAVMTKVFCSETCVDVVYDAMRVVGVDSYTDMHPLAELMNDAMCFPLYDGGNMGARRRNLHSII
KSSSYSSLTAPYATFA

Sequences:

>Translated_416_residues
MSIDFNLNADQIALRDGARAFANTVLKGVRKTIAQYSRPDERFYAIKPFFEQGVHAGFVNALLPKEAGGSDIPTLDFALA
AEELTSVDVNIPSALLGSGLCIKPVAMFGTKEQKKRLLTDFAEDGTRLGALAFTEVTGGANFDSPDPRFGVKTSATLEGD
EWVINGEKHYTTNGTGWDGNNCHLYAVVCRTDLTRNAEESLAVIMVPGNTPGVRVAGLLDTVGHRATISPRMTFENVRVP
VNNILGEPGDGIKIVSTNFAWTAALIGAACVGVMRAAYDYALQYARADSHSGPHPIIEYPTVGYMLADMKMKIEACRYMT
WKACHQYDQSKGAEHELAVMTKVFCSETCVDVVYDAMRVVGVDSYTDMHPLAELMNDAMCFPLYDGGNMGARRRNLHSII
KSSSYSSLTAPYATFA
>Mature_415_residues
SIDFNLNADQIALRDGARAFANTVLKGVRKTIAQYSRPDERFYAIKPFFEQGVHAGFVNALLPKEAGGSDIPTLDFALAA
EELTSVDVNIPSALLGSGLCIKPVAMFGTKEQKKRLLTDFAEDGTRLGALAFTEVTGGANFDSPDPRFGVKTSATLEGDE
WVINGEKHYTTNGTGWDGNNCHLYAVVCRTDLTRNAEESLAVIMVPGNTPGVRVAGLLDTVGHRATISPRMTFENVRVPV
NNILGEPGDGIKIVSTNFAWTAALIGAACVGVMRAAYDYALQYARADSHSGPHPIIEYPTVGYMLADMKMKIEACRYMTW
KACHQYDQSKGAEHELAVMTKVFCSETCVDVVYDAMRVVGVDSYTDMHPLAELMNDAMCFPLYDGGNMGARRRNLHSIIK
SSSYSSLTAPYATFA

Specific function: Unknown

COG id: COG1960

COG function: function code I; Acyl-CoA dehydrogenases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the acyl-CoA dehydrogenase family [H]

Homologues:

Organism=Homo sapiens, GI4557231, Length=388, Percent_Identity=27.5773195876289, Blast_Score=152, Evalue=5e-37,
Organism=Homo sapiens, GI187960098, Length=388, Percent_Identity=27.5773195876289, Blast_Score=152, Evalue=7e-37,
Organism=Homo sapiens, GI4557233, Length=331, Percent_Identity=28.7009063444109, Blast_Score=145, Evalue=7e-35,
Organism=Homo sapiens, GI226958412, Length=379, Percent_Identity=23.4828496042216, Blast_Score=116, Evalue=5e-26,
Organism=Homo sapiens, GI4501859, Length=380, Percent_Identity=25.2631578947368, Blast_Score=112, Evalue=6e-25,
Organism=Homo sapiens, GI226958414, Length=342, Percent_Identity=23.9766081871345, Blast_Score=110, Evalue=3e-24,
Organism=Homo sapiens, GI21361497, Length=366, Percent_Identity=24.5901639344262, Blast_Score=102, Evalue=8e-22,
Organism=Homo sapiens, GI4501857, Length=371, Percent_Identity=23.7196765498652, Blast_Score=100, Evalue=5e-21,
Organism=Homo sapiens, GI7656849, Length=339, Percent_Identity=21.5339233038348, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI4557235, Length=334, Percent_Identity=24.8502994011976, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI76496475, Length=333, Percent_Identity=24.3243243243243, Blast_Score=82, Evalue=6e-16,
Organism=Homo sapiens, GI38505218, Length=343, Percent_Identity=27.1137026239067, Blast_Score=82, Evalue=1e-15,
Organism=Homo sapiens, GI211971008, Length=370, Percent_Identity=25.9459459459459, Blast_Score=76, Evalue=7e-14,
Organism=Homo sapiens, GI48976061, Length=370, Percent_Identity=25.9459459459459, Blast_Score=75, Evalue=8e-14,
Organism=Escherichia coli, GI87081958, Length=318, Percent_Identity=25.7861635220126, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1786223, Length=381, Percent_Identity=23.3595800524934, Blast_Score=72, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17534899, Length=386, Percent_Identity=29.7927461139896, Blast_Score=164, Evalue=6e-41,
Organism=Caenorhabditis elegans, GI17569725, Length=386, Percent_Identity=28.4974093264249, Blast_Score=158, Evalue=6e-39,
Organism=Caenorhabditis elegans, GI17538396, Length=380, Percent_Identity=27.3684210526316, Blast_Score=146, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17570075, Length=409, Percent_Identity=26.8948655256724, Blast_Score=144, Evalue=8e-35,
Organism=Caenorhabditis elegans, GI17506239, Length=384, Percent_Identity=25.5208333333333, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17508101, Length=382, Percent_Identity=24.3455497382199, Blast_Score=111, Evalue=7e-25,
Organism=Caenorhabditis elegans, GI17533517, Length=332, Percent_Identity=23.4939759036145, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71990804, Length=291, Percent_Identity=25.7731958762887, Blast_Score=95, Evalue=9e-20,
Organism=Caenorhabditis elegans, GI71985184, Length=358, Percent_Identity=24.3016759776536, Blast_Score=90, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI71982178, Length=292, Percent_Identity=23.972602739726, Blast_Score=83, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI32563615, Length=237, Percent_Identity=27.4261603375527, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551932, Length=274, Percent_Identity=25.1824817518248, Blast_Score=75, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI71985192, Length=299, Percent_Identity=24.0802675585284, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17505929, Length=274, Percent_Identity=26.2773722627737, Blast_Score=74, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17562446, Length=290, Percent_Identity=25.8620689655172, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24660351, Length=406, Percent_Identity=31.0344827586207, Blast_Score=165, Evalue=6e-41,
Organism=Drosophila melanogaster, GI21356377, Length=408, Percent_Identity=27.6960784313726, Blast_Score=130, Evalue=2e-30,
Organism=Drosophila melanogaster, GI21355753, Length=380, Percent_Identity=25.7894736842105, Blast_Score=125, Evalue=6e-29,
Organism=Drosophila melanogaster, GI24646207, Length=330, Percent_Identity=25.4545454545455, Blast_Score=114, Evalue=1e-25,
Organism=Drosophila melanogaster, GI24666513, Length=375, Percent_Identity=27.4666666666667, Blast_Score=101, Evalue=9e-22,
Organism=Drosophila melanogaster, GI281363737, Length=305, Percent_Identity=24.5901639344262, Blast_Score=87, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006089
- InterPro:   IPR006092
- InterPro:   IPR006090
- InterPro:   IPR006091
- InterPro:   IPR009075
- InterPro:   IPR013786
- InterPro:   IPR009100 [H]

Pfam domain/function: PF00441 Acyl-CoA_dh_1; PF02770 Acyl-CoA_dh_M; PF02771 Acyl-CoA_dh_N [H]

EC number: 1.3.99.3

Molecular weight: Translated: 45232; Mature: 45101

Theoretical pI: Translated: 5.81; Mature: 5.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
5.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIDFNLNADQIALRDGARAFANTVLKGVRKTIAQYSRPDERFYAIKPFFEQGVHAGFVN
CEEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCHHHHHH
ALLPKEAGGSDIPTLDFALAAEELTSVDVNIPSALLGSGLCIKPVAMFGTKEQKKRLLTD
HHCCCCCCCCCCCCHHHHHHHHHHHEECCCCCHHHHCCCCCCHHHHHHCCHHHHHHHHHH
FAEDGTRLGALAFTEVTGGANFDSPDPRFGVKTSATLEGDEWVINGEKHYTTNGTGWDGN
HHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEECCCEEEECCCCCCCCC
NCHLYAVVCRTDLTRNAEESLAVIMVPGNTPGVRVAGLLDTVGHRATISPRMTFENVRVP
CEEEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEHHHHHHCCCCEECCCCEEECCCCCC
VNNILGEPGDGIKIVSTNFAWTAALIGAACVGVMRAAYDYALQYARADSHSGPHPIIEYP
HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
TVGYMLADMKMKIEACRYMTWKACHQYDQSKGAEHELAVMTKVFCSETCVDVVYDAMRVV
CHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVDSYTDMHPLAELMNDAMCFPLYDGGNMGARRRNLHSIIKSSSYSSLTAPYATFA
CCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC
>Mature Secondary Structure 
SIDFNLNADQIALRDGARAFANTVLKGVRKTIAQYSRPDERFYAIKPFFEQGVHAGFVN
EEECCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHCCCHHHHHH
ALLPKEAGGSDIPTLDFALAAEELTSVDVNIPSALLGSGLCIKPVAMFGTKEQKKRLLTD
HHCCCCCCCCCCCCHHHHHHHHHHHEECCCCCHHHHCCCCCCHHHHHHCCHHHHHHHHHH
FAEDGTRLGALAFTEVTGGANFDSPDPRFGVKTSATLEGDEWVINGEKHYTTNGTGWDGN
HHHCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCEEECCCEEEECCCEEEECCCCCCCCC
NCHLYAVVCRTDLTRNAEESLAVIMVPGNTPGVRVAGLLDTVGHRATISPRMTFENVRVP
CEEEEEEEEECCCCCCCCCCEEEEEECCCCCCEEEHHHHHHCCCCEECCCCEEECCCCCC
VNNILGEPGDGIKIVSTNFAWTAALIGAACVGVMRAAYDYALQYARADSHSGPHPIIEYP
HHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
TVGYMLADMKMKIEACRYMTWKACHQYDQSKGAEHELAVMTKVFCSETCVDVVYDAMRVV
CHHEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVDSYTDMHPLAELMNDAMCFPLYDGGNMGARRRNLHSIIKSSSYSSLTAPYATFA
CCCCCCCHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: acyl-CoA; acceptor

Specific reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9387222; 9384377 [H]