| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is nikD [H]
Identifier: 222102878
GI number: 222102878
Start: 556807
End: 557595
Strand: Direct
Name: nikD [H]
Synonym: Avi_7617
Alternate gene names: 222102878
Gene position: 556807-557595 (Clockwise)
Preceding gene: 222102877
Following gene: 222102879
Centisome position: 88.13
GC content: 57.41
Gene sequence:
>789_bases ATGATTCAGACCCTCTCCATCCACAATCTCACGGTTTACCCATCACACGCCGATGGTCATCCTGCTCTTGTCGATCATCT CTCGCTTGAGCTCAAACGTGGCCGCATTCTTGCGCTGGTTGGTGCCAGTGGTTCGGGAAAATCCCTGACCTGTTCAGCAA GCCTTGGCGTGGCACCTGCGGGTGTCACGGTTACCAATGGCACTCTGGCGCTGGATGGTAAGCCCGCCTTGCCTGCGGAC TTGCGTGGCAAGACGGTGGCCACCATCATGCAAAATCCGCGCAGCGCCTTCAATCCGGTGCGAACCATGCGCCATCATGT GGTTGAAACATTGAAGGCCACGGGCCGGTTACCGCCAGACAATGACCTGCAACAGGCTTTGGCCATTATGCACGACGTCG GGCTTGAAGAGCCGCAGCGCATTCTGGAGATGCATGCTTTTGAGATGAGCGGCGGCATGTTGCAACGGATGATGATTGCC CTTGCTCTCATGTCCGGCGCGCCCTTTCTGTTTGCCGATGAGCCAACCACGGACCTTGATCTGATTGTGCAAATGCAGGT TCTGGATCTGATCGAGCGCGTGGCCAGACAACAGGGCTTGGGCGTTTTGCTCGTCACCCATGATATGGGCGTGGTGGCGC GCTTGGCGGATGATGTGGCGGTGATTGATCAAGGCAAACTGGTTGAGACGGGCAGCGTCATGGACATTTTCCATGCGCCC CAACATCCGGTAACACGCATGTTGGTGCAGGCGCACCTCTCCCTCTACGGTCTGGAGCTGGCGCAATGA
Upstream 100 bases:
>100_bases CGGGATTAACCCTGTTTATCAGCGTCATGGCCTTCAACATTCTGGGCGATGCCCTGCGCTACAGGCTCGATCCCCATTTG CGTGTGGAGCATGGTCACCA
Downstream 100 bases:
>100_bases TACTGCTGCAAGCAAAACATCTGAGCAAACATTATCAGCACTACTCGCTGCTTGGCGCAAGTCCGGCCCGAACGGTTGTG GAGGGTGTCTCGCTTTCCAT
Product: nickel transporter ATP-binding protein NikD
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 262; Mature: 262
Protein sequence:
>262_residues MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPAGVTVTNGTLALDGKPALPAD LRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPDNDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIA LALMSGAPFLFADEPTTDLDLIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP QHPVTRMLVQAHLSLYGLELAQ
Sequences:
>Translated_262_residues MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPAGVTVTNGTLALDGKPALPAD LRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPDNDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIA LALMSGAPFLFADEPTTDLDLIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP QHPVTRMLVQAHLSLYGLELAQ >Mature_262_residues MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPAGVTVTNGTLALDGKPALPAD LRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPDNDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIA LALMSGAPFLFADEPTTDLDLIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP QHPVTRMLVQAHLSLYGLELAQ
Specific function: Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system [H]
COG id: COG0444
COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component
Gene ontology:
Cell location: Cell inner membrane; Peripheral membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 ABC transporter domain [H]
Homologues:
Organism=Homo sapiens, GI21536376, Length=237, Percent_Identity=29.957805907173, Blast_Score=84, Evalue=9e-17, Organism=Homo sapiens, GI31657092, Length=213, Percent_Identity=28.169014084507, Blast_Score=73, Evalue=3e-13, Organism=Homo sapiens, GI105990541, Length=214, Percent_Identity=26.6355140186916, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI116734710, Length=214, Percent_Identity=27.1028037383178, Blast_Score=71, Evalue=9e-13, Organism=Homo sapiens, GI27436953, Length=208, Percent_Identity=26.4423076923077, Blast_Score=70, Evalue=2e-12, Organism=Homo sapiens, GI46592898, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI46592915, Length=225, Percent_Identity=27.5555555555556, Blast_Score=69, Evalue=6e-12, Organism=Homo sapiens, GI46592964, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=6e-12, Organism=Homo sapiens, GI46592971, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI46592956, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=7e-12, Organism=Homo sapiens, GI46592978, Length=225, Percent_Identity=27.5555555555556, Blast_Score=68, Evalue=7e-12, Organism=Escherichia coli, GI1789890, Length=239, Percent_Identity=60.2510460251046, Blast_Score=284, Evalue=5e-78, Organism=Escherichia coli, GI145693107, Length=259, Percent_Identity=39.3822393822394, Blast_Score=167, Evalue=7e-43, Organism=Escherichia coli, GI1787759, Length=235, Percent_Identity=37.0212765957447, Blast_Score=154, Evalue=4e-39, Organism=Escherichia coli, GI1789963, Length=253, Percent_Identity=33.201581027668, Blast_Score=149, Evalue=2e-37, Organism=Escherichia coli, GI48994883, Length=253, Percent_Identity=32.8063241106719, Blast_Score=145, Evalue=4e-36, Organism=Escherichia coli, GI1788506, Length=262, Percent_Identity=34.7328244274809, Blast_Score=144, Evalue=8e-36, Organism=Escherichia coli, GI1787548, Length=258, Percent_Identity=30.6201550387597, Blast_Score=127, Evalue=8e-31, Organism=Escherichia coli, GI1789962, Length=234, Percent_Identity=35.042735042735, Blast_Score=122, Evalue=2e-29, Organism=Escherichia coli, GI1787500, Length=234, Percent_Identity=33.3333333333333, Blast_Score=119, Evalue=1e-28, Organism=Escherichia coli, GI1789891, Length=218, Percent_Identity=32.1100917431193, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1787758, Length=238, Percent_Identity=30.2521008403361, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1787547, Length=261, Percent_Identity=28.735632183908, Blast_Score=102, Evalue=2e-23, Organism=Escherichia coli, GI1786398, Length=240, Percent_Identity=31.6666666666667, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI48994997, Length=250, Percent_Identity=31.6, Blast_Score=97, Evalue=1e-21, Organism=Escherichia coli, GI1788225, Length=236, Percent_Identity=31.3559322033898, Blast_Score=93, Evalue=2e-20, Organism=Escherichia coli, GI87081791, Length=248, Percent_Identity=31.4516129032258, Blast_Score=81, Evalue=7e-17, Organism=Escherichia coli, GI87081709, Length=224, Percent_Identity=25.8928571428571, Blast_Score=77, Evalue=8e-16, Organism=Escherichia coli, GI1787712, Length=225, Percent_Identity=28, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1786345, Length=245, Percent_Identity=28.5714285714286, Blast_Score=72, Evalue=3e-14, Organism=Escherichia coli, GI1786563, Length=213, Percent_Identity=30.0469483568075, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87081834, Length=241, Percent_Identity=27.8008298755187, Blast_Score=72, Evalue=4e-14, Organism=Escherichia coli, GI87082268, Length=205, Percent_Identity=29.2682926829268, Blast_Score=71, Evalue=9e-14, Organism=Escherichia coli, GI1789672, Length=242, Percent_Identity=28.5123966942149, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI48994943, Length=221, Percent_Identity=26.2443438914027, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1788165, Length=226, Percent_Identity=28.7610619469027, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1789032, Length=236, Percent_Identity=25, Blast_Score=70, Evalue=1e-13, Organism=Escherichia coli, GI1787029, Length=222, Percent_Identity=27.027027027027, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1790162, Length=249, Percent_Identity=26.9076305220884, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1787105, Length=229, Percent_Identity=31.8777292576419, Blast_Score=70, Evalue=2e-13, Organism=Escherichia coli, GI1786703, Length=234, Percent_Identity=28.6324786324786, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1789991, Length=234, Percent_Identity=26.9230769230769, Blast_Score=69, Evalue=2e-13, Organism=Escherichia coli, GI1786803, Length=251, Percent_Identity=26.2948207171315, Blast_Score=69, Evalue=3e-13, Organism=Escherichia coli, GI1788450, Length=237, Percent_Identity=28.6919831223629, Blast_Score=68, Evalue=5e-13, Organism=Escherichia coli, GI1790467, Length=242, Percent_Identity=24.3801652892562, Blast_Score=67, Evalue=9e-13, Organism=Escherichia coli, GI1787370, Length=226, Percent_Identity=24.3362831858407, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1786872, Length=234, Percent_Identity=29.9145299145299, Blast_Score=66, Evalue=2e-12, Organism=Escherichia coli, GI1787089, Length=232, Percent_Identity=29.7413793103448, Blast_Score=66, Evalue=3e-12, Organism=Escherichia coli, GI1790739, Length=254, Percent_Identity=27.9527559055118, Blast_Score=65, Evalue=4e-12, Organism=Escherichia coli, GI87082267, Length=226, Percent_Identity=26.1061946902655, Blast_Score=65, Evalue=5e-12, Organism=Escherichia coli, GI1787112, Length=215, Percent_Identity=27.906976744186, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1788644, Length=131, Percent_Identity=31.2977099236641, Blast_Score=63, Evalue=2e-11, Organism=Escherichia coli, GI1787164, Length=206, Percent_Identity=30.5825242718447, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1788002, Length=224, Percent_Identity=29.0178571428571, Blast_Score=62, Evalue=3e-11, Organism=Escherichia coli, GI1789593, Length=221, Percent_Identity=24.8868778280543, Blast_Score=62, Evalue=5e-11, Organism=Escherichia coli, GI1786319, Length=212, Percent_Identity=27.3584905660377, Blast_Score=62, Evalue=6e-11, Organism=Escherichia coli, GI1786253, Length=219, Percent_Identity=26.4840182648402, Blast_Score=61, Evalue=6e-11, Organism=Caenorhabditis elegans, GI115533608, Length=225, Percent_Identity=30.2222222222222, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI71983510, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71983523, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI71983516, Length=214, Percent_Identity=30.8411214953271, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17565938, Length=228, Percent_Identity=29.3859649122807, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI193208177, Length=250, Percent_Identity=27.2, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI71992285, Length=241, Percent_Identity=26.9709543568465, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17510237, Length=212, Percent_Identity=26.8867924528302, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17569143, Length=213, Percent_Identity=27.6995305164319, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24641565, Length=227, Percent_Identity=32.15859030837, Blast_Score=74, Evalue=1e-13, Organism=Drosophila melanogaster, GI24581383, Length=221, Percent_Identity=30.316742081448, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581385, Length=221, Percent_Identity=30.316742081448, Blast_Score=70, Evalue=2e-12, Organism=Drosophila melanogaster, GI24581387, Length=221, Percent_Identity=30.316742081448, Blast_Score=69, Evalue=3e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR015857 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: =3.6.3.24 [H]
Molecular weight: Translated: 28113; Mature: 28113
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 5.3 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 5.3 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPA CCEEEEECEEEEECCCCCCCHHHHHHHHHEECCCEEEEEEECCCCCCEEEEECCCCCCCC GVTVTNGTLALDGKPALPADLRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPD CEEEECCEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC NDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIALALMSGAPFLFADEPTTDLD HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH LIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP HHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCEEEECCCCEEECCCCCEECCCC QHPVTRMLVQAHLSLYGLELAQ CCHHHHHHHHHHHHHHHHEECC >Mature Secondary Structure MIQTLSIHNLTVYPSHADGHPALVDHLSLELKRGRILALVGASGSGKSLTCSASLGVAPA CCEEEEECEEEEECCCCCCCHHHHHHHHHEECCCEEEEEEECCCCCCEEEEECCCCCCCC GVTVTNGTLALDGKPALPADLRGKTVATIMQNPRSAFNPVRTMRHHVVETLKATGRLPPD CEEEECCEEEECCCCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC NDLQQALAIMHDVGLEEPQRILEMHAFEMSGGMLQRMMIALALMSGAPFLFADEPTTDLD HHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEECCCCCCHH LIVQMQVLDLIERVARQQGLGVLLVTHDMGVVARLADDVAVIDQGKLVETGSVMDIFHAP HHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCEEEECCCCEEECCCCCEECCCC QHPVTRMLVQAHLSLYGLELAQ CCHHHHHHHHHHHHHHHHEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: NA