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The map label for this gene is ugpB [C]

Identifier: 222102858

GI number: 222102858

Start: 535272

End: 536615

Strand: Reverse

Name: ugpB [C]

Synonym: Avi_7590

Alternate gene names: 222102858

Gene position: 536615-535272 (Counterclockwise)

Preceding gene: 222102859

Following gene: 222102857

Centisome position: 84.94

GC content: 56.92

Gene sequence:

>1344_bases
ATGATACGGACCTGCCCGGCGGCCACCGGGCAGGTCCGAAAGTCAAGACCACTCCACCTTGTAGGAAACACCATGAAAAT
GAAAAACATCTTCGCGGTTGCAGCCCTGACCGTGTTCGGGACTGCACCGGCTTTCGCCGCTGATCCAGTCACGCTGACCT
TTTATCACACACGACTTGCCTTTATGCAGCCTATTCTGGAGGGTTTCAAGAAGGCACATCCAGAGATCACCATCAACGAG
CAGGCACCAGCCGAAAACTACAGCGCCGGTGACCAAAGCGTCATTCGTGGAATGATGACGGGCTCGACGCCGGATGTCTA
TCTCGCCTCCTACTCCTCCATTCCTACCCTTGTCGGCGTGATGAAGGATCGGGGCGAGACAAGTTCGCTCGATCCGATGT
TGGATAAGGAAGGGAAGGACTGGCAGGCGGCCAATTATGCCCCCGCCATTCTTGACCTCGCAAAAGTCGATGGTCAACAG
TATGCGATGCCATTTACGGCATCCCTGCCGCTTCTCTACGTCAATAAGGATTTGGTCGAAAAGGCCGGTGGCAATGTCGA
TCAGTTCCCAACCACATGGGATGGCGTCATTGATCTGGCAGCCAAGATCAGCAAGCTCGGCAATGGCGTCTCGGGCATCG
GTTTCTCGGTCGGTGGGCTGAGCGATGACTGGTACTGGCAGATGATGGTGATGAGCGCTGGTGACCAGATGCTCGACGCC
AAAGCCACGGGTATCGGTTATGACAATAAGGCTGGGCTGGAAGCATTGCGCATCACCCAGGACCTGGCGGTCAAGACGGG
CATGTCGGTTTATGCCGACCCCAAGCCTGCACAGCAGCAGTTCTTTGCCGGGAAGATCGGCATGGTGGTTGAATCGCCAT
CCGATCTCGTGGCTTACGAGACGGCCATCGGCGACCGCTTCACCATGCGCACCGTCCGCTTCCCGCTGATCGATGCCAAG
AAGGGCGGCCTGCCTGCTGGTGGAAATGCCCTGATGGTGTTTTCCAAGGATGCGGCCAAGCGCGCAGCAGCCTGGGAGTT
CGTCAAATACATGACCAGCGCTTCCGTTCAGGCCGACGTCTCAAAGGCAAGTGGCTACATGCCGGTCAACGTTCAGGCCG
CCAAGGCGCTCGAGAGCTTTTATGCAGAGCATCCGAACTTCCAAACGGTCTTCAAGTCGATGAATACGGCCATGCCATGG
TTTGCCTATCCGAACAACACAGCGGATGGCGTCTGGAAGGGCGTGGCACCAATCCTGGACCAATTGCAGCGAGGCAAAAT
CACGCCTGAGGCTGCCATGCCAAAAATCCGCGAGCATGTCGCGGGTGTGATGGCGGCAAAGTAA

Upstream 100 bases:

>100_bases
CTTTGATGGCCTGCGCGACCCTGATCACCGCACCGCTGATCCTGTTGTTTCTCGCCGCACAGCGCGGGTTCGTACAGGGC
GTTACGATGACCGGCGTCAA

Downstream 100 bases:

>100_bases
TGCAAGTCGGGCGCACCCCTTGGTGCGCCCGACCCCGCCCTGCGGTGCTCCGCGCCTTGAGCGGCAGGTACAGATGGAAG
CTTCCAAGGAAAGATAATGA

Product: ABC transporter substrate binding protein (sugar)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MIRTCPAATGQVRKSRPLHLVGNTMKMKNIFAVAALTVFGTAPAFAADPVTLTFYHTRLAFMQPILEGFKKAHPEITINE
QAPAENYSAGDQSVIRGMMTGSTPDVYLASYSSIPTLVGVMKDRGETSSLDPMLDKEGKDWQAANYAPAILDLAKVDGQQ
YAMPFTASLPLLYVNKDLVEKAGGNVDQFPTTWDGVIDLAAKISKLGNGVSGIGFSVGGLSDDWYWQMMVMSAGDQMLDA
KATGIGYDNKAGLEALRITQDLAVKTGMSVYADPKPAQQQFFAGKIGMVVESPSDLVAYETAIGDRFTMRTVRFPLIDAK
KGGLPAGGNALMVFSKDAAKRAAAWEFVKYMTSASVQADVSKASGYMPVNVQAAKALESFYAEHPNFQTVFKSMNTAMPW
FAYPNNTADGVWKGVAPILDQLQRGKITPEAAMPKIREHVAGVMAAK

Sequences:

>Translated_447_residues
MIRTCPAATGQVRKSRPLHLVGNTMKMKNIFAVAALTVFGTAPAFAADPVTLTFYHTRLAFMQPILEGFKKAHPEITINE
QAPAENYSAGDQSVIRGMMTGSTPDVYLASYSSIPTLVGVMKDRGETSSLDPMLDKEGKDWQAANYAPAILDLAKVDGQQ
YAMPFTASLPLLYVNKDLVEKAGGNVDQFPTTWDGVIDLAAKISKLGNGVSGIGFSVGGLSDDWYWQMMVMSAGDQMLDA
KATGIGYDNKAGLEALRITQDLAVKTGMSVYADPKPAQQQFFAGKIGMVVESPSDLVAYETAIGDRFTMRTVRFPLIDAK
KGGLPAGGNALMVFSKDAAKRAAAWEFVKYMTSASVQADVSKASGYMPVNVQAAKALESFYAEHPNFQTVFKSMNTAMPW
FAYPNNTADGVWKGVAPILDQLQRGKITPEAAMPKIREHVAGVMAAK
>Mature_447_residues
MIRTCPAATGQVRKSRPLHLVGNTMKMKNIFAVAALTVFGTAPAFAADPVTLTFYHTRLAFMQPILEGFKKAHPEITINE
QAPAENYSAGDQSVIRGMMTGSTPDVYLASYSSIPTLVGVMKDRGETSSLDPMLDKEGKDWQAANYAPAILDLAKVDGQQ
YAMPFTASLPLLYVNKDLVEKAGGNVDQFPTTWDGVIDLAAKISKLGNGVSGIGFSVGGLSDDWYWQMMVMSAGDQMLDA
KATGIGYDNKAGLEALRITQDLAVKTGMSVYADPKPAQQQFFAGKIGMVVESPSDLVAYETAIGDRFTMRTVRFPLIDAK
KGGLPAGGNALMVFSKDAAKRAAAWEFVKYMTSASVQADVSKASGYMPVNVQAAKALESFYAEHPNFQTVFKSMNTAMPW
FAYPNNTADGVWKGVAPILDQLQRGKITPEAAMPKIREHVAGVMAAK

Specific function: Probably part of an ABC transporter complex [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

Organism=Escherichia coli, GI1789862, Length=249, Percent_Identity=21.6867469879518, Blast_Score=62, Evalue=1e-10,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059
- InterPro:   IPR006061 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48161; Mature: 48161

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIRTCPAATGQVRKSRPLHLVGNTMKMKNIFAVAALTVFGTAPAFAADPVTLTFYHTRLA
CCCCCCCCCCCHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHH
FMQPILEGFKKAHPEITINEQAPAENYSAGDQSVIRGMMTGSTPDVYLASYSSIPTLVGV
HHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
MKDRGETSSLDPMLDKEGKDWQAANYAPAILDLAKVDGQQYAMPFTASLPLLYVNKDLVE
HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCEECCCCEEEECHHHHH
KAGGNVDQFPTTWDGVIDLAAKISKLGNGVSGIGFSVGGLSDDWYWQMMVMSAGDQMLDA
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHEEEEEECCCCHHHHH
KATGIGYDNKAGLEALRITQDLAVKTGMSVYADPKPAQQQFFAGKIGMVVESPSDLVAYE
HHCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEECCCCCEEEH
TAIGDRFTMRTVRFPLIDAKKGGLPAGGNALMVFSKDAAKRAAAWEFVKYMTSASVQADV
HHCCCCEEEEEEECCEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCHHHHH
SKASGYMPVNVQAAKALESFYAEHPNFQTVFKSMNTAMPWFAYPNNTADGVWKGVAPILD
HHCCCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH
QLQRGKITPEAAMPKIREHVAGVMAAK
HHHHCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MIRTCPAATGQVRKSRPLHLVGNTMKMKNIFAVAALTVFGTAPAFAADPVTLTFYHTRLA
CCCCCCCCCCCHHCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEHHHHHH
FMQPILEGFKKAHPEITINEQAPAENYSAGDQSVIRGMMTGSTPDVYLASYSSIPTLVGV
HHHHHHHHHHHCCCCEEECCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHH
MKDRGETSSLDPMLDKEGKDWQAANYAPAILDLAKVDGQQYAMPFTASLPLLYVNKDLVE
HHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEECCEECCCCEEEECHHHHH
KAGGNVDQFPTTWDGVIDLAAKISKLGNGVSGIGFSVGGLSDDWYWQMMVMSAGDQMLDA
HCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCHHEEEEEECCCCHHHHH
KATGIGYDNKAGLEALRITQDLAVKTGMSVYADPKPAQQQFFAGKIGMVVESPSDLVAYE
HHCCCCCCCCCCHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHCCCCEEEECCCCCEEEH
TAIGDRFTMRTVRFPLIDAKKGGLPAGGNALMVFSKDAAKRAAAWEFVKYMTSASVQADV
HHCCCCEEEEEEECCEEECCCCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHCCHHHHH
SKASGYMPVNVQAAKALESFYAEHPNFQTVFKSMNTAMPWFAYPNNTADGVWKGVAPILD
HHCCCCCEECHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHH
QLQRGKITPEAAMPKIREHVAGVMAAK
HHHHCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA