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The map label for this gene is ydcR [C]

Identifier: 222102843

GI number: 222102843

Start: 519622

End: 521025

Strand: Reverse

Name: ydcR [C]

Synonym: Avi_7573

Alternate gene names: 222102843

Gene position: 521025-519622 (Counterclockwise)

Preceding gene: 222102855

Following gene: 222102842

Centisome position: 82.47

GC content: 61.4

Gene sequence:

>1404_bases
ATGAAAACCTGGACTCCCGACCTTTCCCGCAGCGACGGCCCGCGTTATCTGGCGATCGCCGACGTTATCGAGATGGATTT
GAAAAGCGGCAGGCTTCTGGTGGGCGACAGGTTGCCGCCGCAAAGAGACCTTGCCAAACGGCTGGCCATCGATTTTACGA
CTGTTGCGCGCGGTTATGTCGAGGCGCAAAAGCGTGGACTTGTGGCGACCCATGTCGGGCGCGGAACCTTCGTGACTGGC
GGTCCTGAAAAGGAACGGCGCGGCTTCGTATCGGAGGCAGCACTGGATGCCCGACGCATGTCGGTGGTCGATTTTTCGAT
GAATATGCCGCCGGAGCCTGATGATCCAGATCTTCTGGCGCGCATGCAGGAGGGGCTGTCCGCCGTCGCGACCAATATGA
TCCCGCTCCTGCGCTATCAGGGATTCGGCGGAGCTGGCATGGACAAGGAGGCCGCCGCATCATGGCTCAGTCGCCGTGGC
CTTGTTCCTTCCCAGGAGCGTATCTTCGTGACACCCGGCGCCCATCCGGCCCTTCTGGCGATTTTCGGGCTTCTGGCAAA
ACCGGGCGAAATGGTGCTCTCCGAGAATATCACCTATCCCGGCATGCGCTCGATTGCAGCCCAGCTCCGCCTCAATCTGA
CAGGCCTGCCGATGGATGCGGACGGCATTATCCCCGGCGCATTCGCCGAAATCTGTGAAACCGCCAAGCCAAAGGCGCTG
TATCTCAATCCGACGCTTCAGAACCCGATGACCCTCACCATACCCGAAAAGCGACGGGAGGAAATTTGCGCGGTTGCCCG
CAAATATCATGTTCCAATCGTCGAGGATGATGCCTATGGGTTCATCCCGCTTCATAGCCCGGCACCGCTTGCCGCGATGG
CGCCGGATCTCACCTGGCATATTGGCGGATTGGCGAAATGCATCGGTGCGGGCCTGCGGCTTGCCTATGTTGTCGTTCCC
GACACCAAGGCAGCGTGGCCCTTTGCCAGCGCCATGCGGGCGGCAAGCGTCATGGCCTCGCCGCTTTCAGCCGCTCTTGC
CACCCGCTGGATCGAGGATGGCACAGCCGACAGTATCCTGCGCTTTATCCGCACCGAGGCCGCCGCACGCCAGGCGCTCG
TTGCCGAAGTGCTACCGGCGGGCAGCTATCAAAGCGACCCCATCAGCTTCAACATCTGGCTACCCTTGACGAATGGATGG
ACGCGCTCAACCTTCGGCACGCACATGCGGGCATCCGGCATTGGCGTCGTCGCAAGTGATGCCTTCACTGTCGATGGCGT
GGCCGAGGAAGCCGTTCGGGTTTGCCTCGGCGGCCCCATACGCCGGGAGACCCTCAAGGGTGCGCTGGAATTCATGGGCC
ACGCCCTGGAGGGTTCTCCCCAAATGGCTGGTACCTTCTTCTGA

Upstream 100 bases:

>100_bases
CTGATGCGTGAATGCTTCTTTTTGGTGAAAATCGATTTTCAAGAGTGACAGGCAAAGAAAGCAACAATATACAGTCAATG
TTCAATATTGATGAGTTCTC

Downstream 100 bases:

>100_bases
AAATCGCGCCCAAGAAAGTCGCACTTACGTAAGCCGCGGCAACCGGAATGCTGTTTCGAGCGATTTCATAACAATCACGA
CTATTTGCACTACCAAATCA

Product: transcriptional regulator GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MKTWTPDLSRSDGPRYLAIADVIEMDLKSGRLLVGDRLPPQRDLAKRLAIDFTTVARGYVEAQKRGLVATHVGRGTFVTG
GPEKERRGFVSEAALDARRMSVVDFSMNMPPEPDDPDLLARMQEGLSAVATNMIPLLRYQGFGGAGMDKEAAASWLSRRG
LVPSQERIFVTPGAHPALLAIFGLLAKPGEMVLSENITYPGMRSIAAQLRLNLTGLPMDADGIIPGAFAEICETAKPKAL
YLNPTLQNPMTLTIPEKRREEICAVARKYHVPIVEDDAYGFIPLHSPAPLAAMAPDLTWHIGGLAKCIGAGLRLAYVVVP
DTKAAWPFASAMRAASVMASPLSAALATRWIEDGTADSILRFIRTEAAARQALVAEVLPAGSYQSDPISFNIWLPLTNGW
TRSTFGTHMRASGIGVVASDAFTVDGVAEEAVRVCLGGPIRRETLKGALEFMGHALEGSPQMAGTFF

Sequences:

>Translated_467_residues
MKTWTPDLSRSDGPRYLAIADVIEMDLKSGRLLVGDRLPPQRDLAKRLAIDFTTVARGYVEAQKRGLVATHVGRGTFVTG
GPEKERRGFVSEAALDARRMSVVDFSMNMPPEPDDPDLLARMQEGLSAVATNMIPLLRYQGFGGAGMDKEAAASWLSRRG
LVPSQERIFVTPGAHPALLAIFGLLAKPGEMVLSENITYPGMRSIAAQLRLNLTGLPMDADGIIPGAFAEICETAKPKAL
YLNPTLQNPMTLTIPEKRREEICAVARKYHVPIVEDDAYGFIPLHSPAPLAAMAPDLTWHIGGLAKCIGAGLRLAYVVVP
DTKAAWPFASAMRAASVMASPLSAALATRWIEDGTADSILRFIRTEAAARQALVAEVLPAGSYQSDPISFNIWLPLTNGW
TRSTFGTHMRASGIGVVASDAFTVDGVAEEAVRVCLGGPIRRETLKGALEFMGHALEGSPQMAGTFF
>Mature_467_residues
MKTWTPDLSRSDGPRYLAIADVIEMDLKSGRLLVGDRLPPQRDLAKRLAIDFTTVARGYVEAQKRGLVATHVGRGTFVTG
GPEKERRGFVSEAALDARRMSVVDFSMNMPPEPDDPDLLARMQEGLSAVATNMIPLLRYQGFGGAGMDKEAAASWLSRRG
LVPSQERIFVTPGAHPALLAIFGLLAKPGEMVLSENITYPGMRSIAAQLRLNLTGLPMDADGIIPGAFAEICETAKPKAL
YLNPTLQNPMTLTIPEKRREEICAVARKYHVPIVEDDAYGFIPLHSPAPLAAMAPDLTWHIGGLAKCIGAGLRLAYVVVP
DTKAAWPFASAMRAASVMASPLSAALATRWIEDGTADSILRFIRTEAAARQALVAEVLPAGSYQSDPISFNIWLPLTNGW
TRSTFGTHMRASGIGVVASDAFTVDGVAEEAVRVCLGGPIRRETLKGALEFMGHALEGSPQMAGTFF

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=228, Percent_Identity=25.8771929824561, Blast_Score=77, Evalue=4e-14,
Organism=Homo sapiens, GI33469970, Length=228, Percent_Identity=25.8771929824561, Blast_Score=77, Evalue=4e-14,
Organism=Escherichia coli, GI1787710, Length=415, Percent_Identity=24.3373493975904, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI1790797, Length=470, Percent_Identity=22.1276595744681, Blast_Score=93, Evalue=5e-20,
Organism=Saccharomyces cerevisiae, GI6321236, Length=168, Percent_Identity=29.1666666666667, Blast_Score=66, Evalue=1e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 50251; Mature: 50251

Theoretical pI: Translated: 7.18; Mature: 7.18

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTWTPDLSRSDGPRYLAIADVIEMDLKSGRLLVGDRLPPQRDLAKRLAIDFTTVARGYV
CCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH
EAQKRGLVATHVGRGTFVTGGPEKERRGFVSEAALDARRMSVVDFSMNMPPEPDDPDLLA
HHHHCCEEEEECCCCCEECCCCCHHHHCHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHH
RMQEGLSAVATNMIPLLRYQGFGGAGMDKEAAASWLSRRGLVPSQERIFVTPGAHPALLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHH
IFGLLAKPGEMVLSENITYPGMRSIAAQLRLNLTGLPMDADGIIPGAFAEICETAKPKAL
HHHHHCCCCHHHHCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHCCCCCEE
YLNPTLQNPMTLTIPEKRREEICAVARKYHVPIVEDDAYGFIPLHSPAPLAAMAPDLTWH
EECCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCHHHHCCCCEEH
IGGLAKCIGAGLRLAYVVVPDTKAAWPFASAMRAASVMASPLSAALATRWIEDGTADSIL
HHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RFIRTEAAARQALVAEVLPAGSYQSDPISFNIWLPLTNGWTRSTFGTHMRASGIGVVASD
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECC
AFTVDGVAEEAVRVCLGGPIRRETLKGALEFMGHALEGSPQMAGTFF
CEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKTWTPDLSRSDGPRYLAIADVIEMDLKSGRLLVGDRLPPQRDLAKRLAIDFTTVARGYV
CCCCCCCCCCCCCCCEEEHHHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHH
EAQKRGLVATHVGRGTFVTGGPEKERRGFVSEAALDARRMSVVDFSMNMPPEPDDPDLLA
HHHHCCEEEEECCCCCEECCCCCHHHHCHHHHHHHHHHHEEEEEEECCCCCCCCCHHHHH
RMQEGLSAVATNMIPLLRYQGFGGAGMDKEAAASWLSRRGLVPSQERIFVTPGAHPALLA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEECCCCCHHHHH
IFGLLAKPGEMVLSENITYPGMRSIAAQLRLNLTGLPMDADGIIPGAFAEICETAKPKAL
HHHHHCCCCHHHHCCCCCCCCHHHHHHHHHEEEECCCCCCCCCCCHHHHHHHHCCCCCEE
YLNPTLQNPMTLTIPEKRREEICAVARKYHVPIVEDDAYGFIPLHSPAPLAAMAPDLTWH
EECCCCCCCEEEECCHHHHHHHHHHHHHHCCCEEECCCEEEEECCCCCCHHHHCCCCEEH
IGGLAKCIGAGLRLAYVVVPDTKAAWPFASAMRAASVMASPLSAALATRWIEDGTADSIL
HHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
RFIRTEAAARQALVAEVLPAGSYQSDPISFNIWLPLTNGWTRSTFGTHMRASGIGVVASD
HHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCEEEECC
AFTVDGVAEEAVRVCLGGPIRRETLKGALEFMGHALEGSPQMAGTFF
CEEECHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1400197 [H]