Click here to switch to the map view.

The map label for this gene is 222102819

Identifier: 222102819

GI number: 222102819

Start: 485953

End: 486312

Strand: Direct

Name: 222102819

Synonym: Avi_7541

Alternate gene names: NA

Gene position: 485953-486312 (Clockwise)

Preceding gene: 222102818

Following gene: 222102828

Centisome position: 76.92

GC content: 52.5

Gene sequence:

>360_bases
ATGACCAGATCTAGCCGTGATCCACTTTATCGTCGGCATCGATTTCCAGCCGAGGTGATTGCCCATGCCGTTTGGCTGTA
TTTCCTGTTTCCGCTCAGCCTGCGGATTGTCGCGGATCTGCTGGCGGCGCGTGGCATCCTCGTCTCTCATCAAACCGTGC
GGCTCTGGGCTGAGAAATTCGGCAGACACTTTGCCAATGATTTCCGCAAGCGATCTACCGGCAAGCTCGGTGATAAATGG
CATCTCGATGAGGTTGTCATCACCATTGGTGGAAAGAAACACTTTCACCTTTTCGCGTCCATCTACGACCCGATAGCAAA
CCGGGCTTGTCGCAAATTTTCGGGTTTAATCGTGTGTTGA

Upstream 100 bases:

>100_bases
GAGACGATCTGAACCATGGGCGAGGCATTTAGCCTCGCTTACGGTTCAGTTGGCCTTGTAACGTTTACCGGACGTCGATC
AAAATGAGGGATCTGGCTGC

Downstream 100 bases:

>100_bases
CCAGAGGTATGGAGTTTGCCGCTCCGAAAGTTGCGGAGCGAGCCCATGATTCTGAATGCTATTGCCGAGTAGCTGATCCG
GATAAAGAAGAACATGCCAA

Product: transposase

Products: NA

Alternate protein names: IS6 Family Transposase; Integrase Catalytic Region; Integrase Core Domain Protein; Transposase-Related Protein; IS Element Transposase; Integrase Catalytic Subunit; Transposase Protein; Transposase Pseudogene; ISHne6 Transposase

Number of amino acids: Translated: 119; Mature: 118

Protein sequence:

>119_residues
MTRSSRDPLYRRHRFPAEVIAHAVWLYFLFPLSLRIVADLLAARGILVSHQTVRLWAEKFGRHFANDFRKRSTGKLGDKW
HLDEVVITIGGKKHFHLFASIYDPIANRACRKFSGLIVC

Sequences:

>Translated_119_residues
MTRSSRDPLYRRHRFPAEVIAHAVWLYFLFPLSLRIVADLLAARGILVSHQTVRLWAEKFGRHFANDFRKRSTGKLGDKW
HLDEVVITIGGKKHFHLFASIYDPIANRACRKFSGLIVC
>Mature_118_residues
TRSSRDPLYRRHRFPAEVIAHAVWLYFLFPLSLRIVADLLAARGILVSHQTVRLWAEKFGRHFANDFRKRSTGKLGDKWH
LDEVVITIGGKKHFHLFASIYDPIANRACRKFSGLIVC

Specific function: Unknown

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 13803; Mature: 13672

Theoretical pI: Translated: 11.12; Mature: 11.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRSSRDPLYRRHRFPAEVIAHAVWLYFLFPLSLRIVADLLAARGILVSHQTVRLWAEKF
CCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GRHFANDFRKRSTGKLGDKWHLDEVVITIGGKKHFHLFASIYDPIANRACRKFSGLIVC
HHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TRSSRDPLYRRHRFPAEVIAHAVWLYFLFPLSLRIVADLLAARGILVSHQTVRLWAEKF
CCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GRHFANDFRKRSTGKLGDKWHLDEVVITIGGKKHFHLFASIYDPIANRACRKFSGLIVC
HHHHHHHHHHHCCCCCCCCCCHHHEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA