Click here to switch to the map view.

The map label for this gene is amaB [H]

Identifier: 222102780

GI number: 222102780

Start: 439257

End: 440552

Strand: Direct

Name: amaB [H]

Synonym: Avi_7482

Alternate gene names: 222102780

Gene position: 439257-440552 (Clockwise)

Preceding gene: 222102779

Following gene: 222102784

Centisome position: 69.53

GC content: 57.79

Gene sequence:

>1296_bases
ATGGCACAGGCGGGTAAAGGACTGTTAGAGGTCAATGGCGAGCGGCTTTTGGCCCGATTGGACCAATTTGCCGCGATTGG
CGCAACGCCCAAAGGCGGTGTTAATCGGCAGGCCCTGACGGCGCTTGATCGTCAGGCGCGGCAATTGCTGGCCGATCTCG
GCCAAACGCGTGGATTTTCTGTCTATCAAGATCCGATCGCCAACCTGTTCCTGCGCCGCGAGGGCCAGAACCCGGATTTG
CCGCCGCTGCTGATCGGCAGCCATCTCGACAGCCAGCCCTCTGGCGGGCGGTTTGATGGTGCGCTGGGCACACTCTGCGC
CTTCGAAGTTTTGGAAACATTGGAAGACAATGGCATAGACACCGTCAGGCCTGTCGAGGTTGTTGCCTTCACCAATGAAG
AAGGCTGCCGTTTTGCACCCGGATGCATGGGGTCCATGGCCTTTTCGCAGGGTGCCATTCCCGCCGCATGGCATACAGCG
CGGGCAACGGATGGCGCGCTGTTTTCCGATGACTTGGCAGCAACGCTTGCTGATTTGCAAGGCGCTGCCATGAGGCCGCT
GGGCTTCCCGGTATTTGCTTATCTTGAAGTGCATATCGAGCAAGGCCCATCCTTGGAAAAAGAGGGTCTGCCCATCGGCA
TCGTCACGGGCATTCAGGGCACCCGCTGGCTTCAGGTGACCATCTCGGGCCAGACTGCCCATGCAGGCACCACAGCACTG
TCCTACCGCAAAGACCCCATGCGCGCCGCCGTCTCCGGCTTGAACGTGCTTTATAACGACATCATGCCGCAAGATGCCCA
TTCACGCCTGACAGTCGGCCGGTTCTCGCTGGAGCCGGGGGCCATCAATGCCATTCCGGCAGCGGTGACGTTTTCGCTGG
ATATCCGCCACCCCAATGTTGAGCAACTGGATCTGATCGAAGCGAAGATACGCAAGGTCCTGCAGGATCTTGCCGTGGAG
AATGGATGTGGTCTCGAAATGGAACTGCTCTTCGATATGGCTCCAGCGCGTTTCCCGGATCATCTGGTTACCATACTGGA
GGGTGCGGTTGTTAAGGCTGGTTTTGCCCATAAATCCATGGTGTCCGGTGCTTTTCACGATGCACTCTTCATCAATCGTG
TCGCACCCTCTGCGATGATTTTCACTCCATGCCGAGATGGATTGAGCCATAACGAAGAAGAGTATGTAATGCCTGCGGAT
TCTGTCGCAGGGGCGCAAGTGCTGCTGACCGCGAGCTCGCAACTCCTGTCAAACTTGGCGACACAGGCATCTGTCGTTGT
CGCTCACCTCCGTTAG

Upstream 100 bases:

>100_bases
CATCACTCAAACATGGCGATGTCTGGTGGAATCCGGTCGATATCGAACGGGTCAAAGCTTTCGTGGCGACGGCCCAGCCC
GGTTTGAAAGCATAAATGCC

Downstream 100 bases:

>100_bases
AGTGCCAGAACACAGCCAATCAACTGAATCGAAACCATCAGCCGTTCACGGATTCCCCATCAGCAACATCCTTTTGGCTC
TTCATGAAGGGCCGTTTGAC

Product: allantoate amidohydrolase

Products: NA

Alternate protein names: L-carbamoylase [H]

Number of amino acids: Translated: 431; Mature: 430

Protein sequence:

>431_residues
MAQAGKGLLEVNGERLLARLDQFAAIGATPKGGVNRQALTALDRQARQLLADLGQTRGFSVYQDPIANLFLRREGQNPDL
PPLLIGSHLDSQPSGGRFDGALGTLCAFEVLETLEDNGIDTVRPVEVVAFTNEEGCRFAPGCMGSMAFSQGAIPAAWHTA
RATDGALFSDDLAATLADLQGAAMRPLGFPVFAYLEVHIEQGPSLEKEGLPIGIVTGIQGTRWLQVTISGQTAHAGTTAL
SYRKDPMRAAVSGLNVLYNDIMPQDAHSRLTVGRFSLEPGAINAIPAAVTFSLDIRHPNVEQLDLIEAKIRKVLQDLAVE
NGCGLEMELLFDMAPARFPDHLVTILEGAVVKAGFAHKSMVSGAFHDALFINRVAPSAMIFTPCRDGLSHNEEEYVMPAD
SVAGAQVLLTASSQLLSNLATQASVVVAHLR

Sequences:

>Translated_431_residues
MAQAGKGLLEVNGERLLARLDQFAAIGATPKGGVNRQALTALDRQARQLLADLGQTRGFSVYQDPIANLFLRREGQNPDL
PPLLIGSHLDSQPSGGRFDGALGTLCAFEVLETLEDNGIDTVRPVEVVAFTNEEGCRFAPGCMGSMAFSQGAIPAAWHTA
RATDGALFSDDLAATLADLQGAAMRPLGFPVFAYLEVHIEQGPSLEKEGLPIGIVTGIQGTRWLQVTISGQTAHAGTTAL
SYRKDPMRAAVSGLNVLYNDIMPQDAHSRLTVGRFSLEPGAINAIPAAVTFSLDIRHPNVEQLDLIEAKIRKVLQDLAVE
NGCGLEMELLFDMAPARFPDHLVTILEGAVVKAGFAHKSMVSGAFHDALFINRVAPSAMIFTPCRDGLSHNEEEYVMPAD
SVAGAQVLLTASSQLLSNLATQASVVVAHLR
>Mature_430_residues
AQAGKGLLEVNGERLLARLDQFAAIGATPKGGVNRQALTALDRQARQLLADLGQTRGFSVYQDPIANLFLRREGQNPDLP
PLLIGSHLDSQPSGGRFDGALGTLCAFEVLETLEDNGIDTVRPVEVVAFTNEEGCRFAPGCMGSMAFSQGAIPAAWHTAR
ATDGALFSDDLAATLADLQGAAMRPLGFPVFAYLEVHIEQGPSLEKEGLPIGIVTGIQGTRWLQVTISGQTAHAGTTALS
YRKDPMRAAVSGLNVLYNDIMPQDAHSRLTVGRFSLEPGAINAIPAAVTFSLDIRHPNVEQLDLIEAKIRKVLQDLAVEN
GCGLEMELLFDMAPARFPDHLVTILEGAVVKAGFAHKSMVSGAFHDALFINRVAPSAMIFTPCRDGLSHNEEEYVMPADS
VAGAQVLLTASSQLLSNLATQASVVVAHLR

Specific function: Involved In The Anaerobic Utilization Of Allantoin. Converts Allantoate To (S)-Ureidoglycolate And Ammonia. [C]

COG id: COG0624

COG function: function code E; Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20 family [H]

Homologues:

Organism=Escherichia coli, GI1786726, Length=404, Percent_Identity=29.9504950495049, Blast_Score=169, Evalue=2e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010158
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: =3.5.1.87 [H]

Molecular weight: Translated: 45939; Mature: 45808

Theoretical pI: Translated: 5.00; Mature: 5.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQAGKGLLEVNGERLLARLDQFAAIGATPKGGVNRQALTALDRQARQLLADLGQTRGFS
CCCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
VYQDPIANLFLRREGQNPDLPPLLIGSHLDSQPSGGRFDGALGTLCAFEVLETLEDNGID
HHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
TVRPVEVVAFTNEEGCRFAPGCMGSMAFSQGAIPAAWHTARATDGALFSDDLAATLADLQ
CCCCEEEEEEECCCCCEECCCCCHHHHHCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHHC
GAAMRPLGFPVFAYLEVHIEQGPSLEKEGLPIGIVTGIQGTRWLQVTISGQTAHAGTTAL
CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCHHH
SYRKDPMRAAVSGLNVLYNDIMPQDAHSRLTVGRFSLEPGAINAIPAAVTFSLDIRHPNV
HCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCC
EQLDLIEAKIRKVLQDLAVENGCGLEMELLFDMAPARFPDHLVTILEGAVVKAGFAHKSM
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHH
VSGAFHDALFINRVAPSAMIFTPCRDGLSHNEEEYVMPADSVAGAQVLLTASSQLLSNLA
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEHHHHHHHHHH
TQASVVVAHLR
HHHHHEEEECC
>Mature Secondary Structure 
AQAGKGLLEVNGERLLARLDQFAAIGATPKGGVNRQALTALDRQARQLLADLGQTRGFS
CCCCCCCEEECHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
VYQDPIANLFLRREGQNPDLPPLLIGSHLDSQPSGGRFDGALGTLCAFEVLETLEDNGID
HHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
TVRPVEVVAFTNEEGCRFAPGCMGSMAFSQGAIPAAWHTARATDGALFSDDLAATLADLQ
CCCCEEEEEEECCCCCEECCCCCHHHHHCCCCCCCHHHHCCCCCCCEEHHHHHHHHHHHC
GAAMRPLGFPVFAYLEVHIEQGPSLEKEGLPIGIVTGIQGTRWLQVTISGQTAHAGTTAL
CCCCCCCCCCEEEEEEEEECCCCCCCCCCCCEEEEECCCCCEEEEEEECCCCCCCCCHHH
SYRKDPMRAAVSGLNVLYNDIMPQDAHSRLTVGRFSLEPGAINAIPAAVTFSLDIRHPNV
HCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCEEEEEEEEECCCCC
EQLDLIEAKIRKVLQDLAVENGCGLEMELLFDMAPARFPDHLVTILEGAVVKAGFAHKSM
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHHH
VSGAFHDALFINRVAPSAMIFTPCRDGLSHNEEEYVMPADSVAGAQVLLTASSQLLSNLA
HHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEHHHHHHHHHH
TQASVVVAHLR
HHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9023955; 8285691 [H]