| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102759
Identifier: 222102759
GI number: 222102759
Start: 416575
End: 417717
Strand: Direct
Name: 222102759
Synonym: Avi_7450
Alternate gene names: NA
Gene position: 416575-417717 (Clockwise)
Preceding gene: 222102755
Following gene: 222102760
Centisome position: 65.94
GC content: 55.99
Gene sequence:
>1143_bases ATGCCCATGCAACGACGTGAATTCCTGAAATATTCTGCGACGGGTGTTGGTCTGGCTGTGGCTGGTGCAAGGCCCGCCTT TGCGGCCCCCGGTGTTCTCGACATATTCTTCAACAGCGATACCAATGTCATTGATTTCTGGACCCAGGTGATCAAGCCGG GTTTTGAGGCGGCCCATTCCGGTGTGACGCTCAATCTTGTTCCGGGCGGTGGCGGTTCCGCGATGAATTCTCTGGCTGAT CGCGCTATGGCCGCCTTCAAAGCCAAGAAGGACCCACAGGTCGATATGCTGGAAGCTGTAACCCCGTTTTATCCCACAGG GTCGCTGGAAGCCGGTCTCTGGGTGGATTTTTCCAAGGCTGGCCTGTCCAATTACGACAAGGTCAACCCGGTCGTGGTGC AAAGCCCGGCGCTTTTGCCCTATCGCGGCTCGCAAGTCGTGATGATGTATAATGCCGACAAGGTCAAAGCCGTCCCCACC ACCTTCAAGGAACTTGTGGCGTGGATCAAGGCCAATCCCGGCCAGTTTGCCTATGCTCGTCCTGATCTTGGCGATTCCGG GGCATGCTTTATCGAGCGTGCGCTTCAGGAAGTCACCGGTCTGAACCCTGATCTGTTCCTGCCGGAAAATTACACCCCGG CCTATGCCGAGCCGCTGTTTTCCAAGCTCTGGCCTTTGCTCAAGGATATTCAGCCATCGCTGTTCAATGGCGGTGAATAC ACATCCGGTAACACAGCGTCCATCCAGATGCTGGCCAGTGGTGCTGTTTCCATGACCGTTGCCTGGTCAGACATGGCCTT GCAGGCGATGAGCCAGGGCGTGGTGCCTGAGACAACATCTGTTGCGCAGTTGCAGGATCTGGCGTTTACCGGCGGCTTCT CCGGCATTGTTGTGCCAACGGTTGCGGCCAACAAGGATATGGTGCTCAAACTCGCTGATTACCTGATCACAGCGGACATC CAGAACCACGTTGTGACCGACCTTGGCGGCTTCCCAGGCATCAAGTGGGAGTTCATGTCCAAGGAACTTCAGGATAAATT CGCAAAAGTCGCGCCCAAATCCATCCCGCTTTTCCCCGGCACATGGGAGCCTGCACTGTTTGAGGGCTGGTATCGTAACG TCGCATCGAACATCAAACGCTGA
Upstream 100 bases:
>100_bases ACGTATCTAAAGCGCAGTCGCCAATCTGGAGTGGGAACCTGGCCTTATCCGTGGCCAAACAAAGGGCAGGCGTGTGTCCG TGCTGCCAATGGAGGTGTCA
Downstream 100 bases:
>100_bases GGCATGGTGATGCAAACGCACGGCCTCTCGGAAGGATCGCGCTGGACCGGATTGGCCTTTGTGGCCATTCCGGTTCTGTC CATCGTGATTTTTCTGTTCT
Product: extracellular solute-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 380; Mature: 379
Protein sequence:
>380_residues MPMQRREFLKYSATGVGLAVAGARPAFAAPGVLDIFFNSDTNVIDFWTQVIKPGFEAAHSGVTLNLVPGGGGSAMNSLAD RAMAAFKAKKDPQVDMLEAVTPFYPTGSLEAGLWVDFSKAGLSNYDKVNPVVVQSPALLPYRGSQVVMMYNADKVKAVPT TFKELVAWIKANPGQFAYARPDLGDSGACFIERALQEVTGLNPDLFLPENYTPAYAEPLFSKLWPLLKDIQPSLFNGGEY TSGNTASIQMLASGAVSMTVAWSDMALQAMSQGVVPETTSVAQLQDLAFTGGFSGIVVPTVAANKDMVLKLADYLITADI QNHVVTDLGGFPGIKWEFMSKELQDKFAKVAPKSIPLFPGTWEPALFEGWYRNVASNIKR
Sequences:
>Translated_380_residues MPMQRREFLKYSATGVGLAVAGARPAFAAPGVLDIFFNSDTNVIDFWTQVIKPGFEAAHSGVTLNLVPGGGGSAMNSLAD RAMAAFKAKKDPQVDMLEAVTPFYPTGSLEAGLWVDFSKAGLSNYDKVNPVVVQSPALLPYRGSQVVMMYNADKVKAVPT TFKELVAWIKANPGQFAYARPDLGDSGACFIERALQEVTGLNPDLFLPENYTPAYAEPLFSKLWPLLKDIQPSLFNGGEY TSGNTASIQMLASGAVSMTVAWSDMALQAMSQGVVPETTSVAQLQDLAFTGGFSGIVVPTVAANKDMVLKLADYLITADI QNHVVTDLGGFPGIKWEFMSKELQDKFAKVAPKSIPLFPGTWEPALFEGWYRNVASNIKR >Mature_379_residues PMQRREFLKYSATGVGLAVAGARPAFAAPGVLDIFFNSDTNVIDFWTQVIKPGFEAAHSGVTLNLVPGGGGSAMNSLADR AMAAFKAKKDPQVDMLEAVTPFYPTGSLEAGLWVDFSKAGLSNYDKVNPVVVQSPALLPYRGSQVVMMYNADKVKAVPTT FKELVAWIKANPGQFAYARPDLGDSGACFIERALQEVTGLNPDLFLPENYTPAYAEPLFSKLWPLLKDIQPSLFNGGEYT SGNTASIQMLASGAVSMTVAWSDMALQAMSQGVVPETTSVAQLQDLAFTGGFSGIVVPTVAANKDMVLKLADYLITADIQ NHVVTDLGGFPGIKWEFMSKELQDKFAKVAPKSIPLFPGTWEPALFEGWYRNVASNIKR
Specific function: Unknown
COG id: COG4134
COG function: function code R; ABC-type uncharacterized transport system, periplasmic component
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40998; Mature: 40867
Theoretical pI: Translated: 5.02; Mature: 5.02
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 3.4 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPMQRREFLKYSATGVGLAVAGARPAFAAPGVLDIFFNSDTNVIDFWTQVIKPGFEAAHS CCCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHC GVTLNLVPGGGGSAMNSLADRAMAAFKAKKDPQVDMLEAVTPFYPTGSLEAGLWVDFSKA CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEHHC GLSNYDKVNPVVVQSPALLPYRGSQVVMMYNADKVKAVPTTFKELVAWIKANPGQFAYAR CCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHCCCCCEEEEC PDLGDSGACFIERALQEVTGLNPDLFLPENYTPAYAEPLFSKLWPLLKDIQPSLFNGGEY CCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCC TSGNTASIQMLASGAVSMTVAWSDMALQAMSQGVVPETTSVAQLQDLAFTGGFSGIVVPT CCCCCEEEEEEECCCEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEE VAANKDMVLKLADYLITADIQNHVVTDLGGFPGIKWEFMSKELQDKFAKVAPKSIPLFPG EECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC TWEPALFEGWYRNVASNIKR CCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure PMQRREFLKYSATGVGLAVAGARPAFAAPGVLDIFFNSDTNVIDFWTQVIKPGFEAAHS CCCHHHHHHHCCCCCEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCHHHHHC GVTLNLVPGGGGSAMNSLADRAMAAFKAKKDPQVDMLEAVTPFYPTGSLEAGLWVDFSKA CEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCCCCCCEEEEEHHC GLSNYDKVNPVVVQSPALLPYRGSQVVMMYNADKVKAVPTTFKELVAWIKANPGQFAYAR CCCCCCCCCCEEEECCCCCCCCCCEEEEEECCCCCEECHHHHHHHHHHHHCCCCCEEEEC PDLGDSGACFIERALQEVTGLNPDLFLPENYTPAYAEPLFSKLWPLLKDIQPSLFNGGEY CCCCCCCHHHHHHHHHHHHCCCCCEECCCCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCC TSGNTASIQMLASGAVSMTVAWSDMALQAMSQGVVPETTSVAQLQDLAFTGGFSGIVVPT CCCCCEEEEEEECCCEEEEEEHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCCEEEEE VAANKDMVLKLADYLITADIQNHVVTDLGGFPGIKWEFMSKELQDKFAKVAPKSIPLFPG EECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC TWEPALFEGWYRNVASNIKR CCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA