| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102722
Identifier: 222102722
GI number: 222102722
Start: 373498
End: 374628
Strand: Direct
Name: 222102722
Synonym: Avi_7399
Alternate gene names: NA
Gene position: 373498-374628 (Clockwise)
Preceding gene: 222102719
Following gene: 222102723
Centisome position: 59.12
GC content: 58.53
Gene sequence:
>1131_bases ATGCGCGTCGTAGTGATAGGGGCCGGGATCGTTGGCAGTTCCGTGGCCTATGAGGCAGCTAAAGCCGGGGCTCAGGTAAC CGTACTTGAGGCTGGGAGGATCGCTGGCGGAGCATCCACCTCCAGTTTCGCCTGGACCAATGCGACGGGCAAGAGGCCTC AGCCCTACTTCGCGTTAAATGTTGCCGGCATGCGGGCGCATCTCGATCTTGCTCGTGAATTTGGTCATGCACCATGGTTC CACCAGACCGGCAGCATCGAATGGTATTCGGACGAGAGCGATTGGCCAGCCCAACTCGACAATGCCGACCAAATGCGCGA CTGGGGCTACGGTGTCGAGTGGATCAGCAAAAGCCGGCTGACTGAGCTGGAACCGGAAATCGATCACGGCGCAATCAAAC AATCACCGCTCGTCTATTATCCCGAAGAGGGTTGGGTCCATCCAGCTCTCTATGCTGCCTGGCTTCTGCGCGCGGCGAAA GAAAAGTGGAACGCCGATATCCGACCGTTCTCCGGCGTCACGTCGATCGATGTTCAAAATGGCGTAGCGAAAGCGGTCAA GACCGTCGACGGAGCGGCCTTTGAGGCTGATGCCATCATCAATTGCACGGGTAGCTGGGCGGCGCATGTTTTGGAAGGCG TGCCAGCCATTCCGATGGCATCGAATATGGGCATTGTGGGCTTCACATTGCCGATCGCGACAACGCTTCGTCGTCAATTC CATATGGACGATCTTGATGTGCGTCCGGATGGCGCCGGCCGTCTCATGATCCACAAGGTCTCGGTCGACTCTCTCGTCAC TAAGATGCAGCCCCTGAACACGCAAGGCCCGGAAGCCGCCCTCCTGCTGGACGCCGTTAGAAAGGTTCTGCCCGCGATTC AGCCTGACGATATGGAATCGATCCGCACGATCGTGCGACCGATACCCGGCGACAACCTGACCTGCAGCGGGTGGGTTCCT GGAGTGGATGGCTATTACGTTGCCGTCACCCATAGCGGCGTATCGATCGCACCTCATCTGGGCAAAGCGGTAGCTCAGGA GGTGGTCCGCGGGCGTCTCCACGAGAGCCTCACTGATTTCCGCCCTGACCGCTTTCTAGCCGCAAAGAATGGAATGGGAC AAAGAGCATGA
Upstream 100 bases:
>100_bases TCCGCTCCTGCGTCACCCATACATGCTCACATCATTCCATTTATTGCCTTCCGAACTGAGGGTGGAATGCCGGTCGAACT GAGGTCAAGAGGAGAAAAAT
Downstream 100 bases:
>100_bases CGATTACCCGCATCGCGAAAACCGAACGACTGAGCCGTGTCGTTATTCATGAGAAAGTCGCATATTTCTCAGGTCTGACT GCCGATGACAGGAGCCAGGA
Product: oxidoreductase
Products: NA
Alternate protein names: Fructosyl-Amino Acid Oxidase; D-Amino Acid Oxidase Protein; Oxidoreductase; Glycine/D-Amino Acid Oxidase Deaminating; Glycine Oxidase ThiO; Splicing Factor Proline- And Glutamine-Rich; D-Amino Acid Oxidase; Fructosyl Amino Acid Oxidase; Sarcosine Oxidase Subunit Beta
Number of amino acids: Translated: 376; Mature: 376
Protein sequence:
>376_residues MRVVVIGAGIVGSSVAYEAAKAGAQVTVLEAGRIAGGASTSSFAWTNATGKRPQPYFALNVAGMRAHLDLAREFGHAPWF HQTGSIEWYSDESDWPAQLDNADQMRDWGYGVEWISKSRLTELEPEIDHGAIKQSPLVYYPEEGWVHPALYAAWLLRAAK EKWNADIRPFSGVTSIDVQNGVAKAVKTVDGAAFEADAIINCTGSWAAHVLEGVPAIPMASNMGIVGFTLPIATTLRRQF HMDDLDVRPDGAGRLMIHKVSVDSLVTKMQPLNTQGPEAALLLDAVRKVLPAIQPDDMESIRTIVRPIPGDNLTCSGWVP GVDGYYVAVTHSGVSIAPHLGKAVAQEVVRGRLHESLTDFRPDRFLAAKNGMGQRA
Sequences:
>Translated_376_residues MRVVVIGAGIVGSSVAYEAAKAGAQVTVLEAGRIAGGASTSSFAWTNATGKRPQPYFALNVAGMRAHLDLAREFGHAPWF HQTGSIEWYSDESDWPAQLDNADQMRDWGYGVEWISKSRLTELEPEIDHGAIKQSPLVYYPEEGWVHPALYAAWLLRAAK EKWNADIRPFSGVTSIDVQNGVAKAVKTVDGAAFEADAIINCTGSWAAHVLEGVPAIPMASNMGIVGFTLPIATTLRRQF HMDDLDVRPDGAGRLMIHKVSVDSLVTKMQPLNTQGPEAALLLDAVRKVLPAIQPDDMESIRTIVRPIPGDNLTCSGWVP GVDGYYVAVTHSGVSIAPHLGKAVAQEVVRGRLHESLTDFRPDRFLAAKNGMGQRA >Mature_376_residues MRVVVIGAGIVGSSVAYEAAKAGAQVTVLEAGRIAGGASTSSFAWTNATGKRPQPYFALNVAGMRAHLDLAREFGHAPWF HQTGSIEWYSDESDWPAQLDNADQMRDWGYGVEWISKSRLTELEPEIDHGAIKQSPLVYYPEEGWVHPALYAAWLLRAAK EKWNADIRPFSGVTSIDVQNGVAKAVKTVDGAAFEADAIINCTGSWAAHVLEGVPAIPMASNMGIVGFTLPIATTLRRQF HMDDLDVRPDGAGRLMIHKVSVDSLVTKMQPLNTQGPEAALLLDAVRKVLPAIQPDDMESIRTIVRPIPGDNLTCSGWVP GVDGYYVAVTHSGVSIAPHLGKAVAQEVVRGRLHESLTDFRPDRFLAAKNGMGQRA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 40671; Mature: 40671
Theoretical pI: Translated: 6.29; Mature: 6.29
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVVVIGAGIVGSSVAYEAAKAGAQVTVLEAGRIAGGASTSSFAWTNATGKRPQPYFALN CEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEE VAGMRAHLDLAREFGHAPWFHQTGSIEWYSDESDWPAQLDNADQMRDWGYGVEWISKSRL ECCHHHHHHHHHHCCCCCCEECCCCEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC TELEPEIDHGAIKQSPLVYYPEEGWVHPALYAAWLLRAAKEKWNADIRPFSGVTSIDVQN CCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHH GVAKAVKTVDGAAFEADAIINCTGSWAAHVLEGVPAIPMASNMGIVGFTLPIATTLRRQF HHHHHHHHHCCCCEECCEEEEECCHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHH HMDDLDVRPDGAGRLMIHKVSVDSLVTKMQPLNTQGPEAALLLDAVRKVLPAIQPDDMES CCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH IRTIVRPIPGDNLTCSGWVPGVDGYYVAVTHSGVSIAPHLGKAVAQEVVRGRLHESLTDF HHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHHHC RPDRFLAAKNGMGQRA CCCCEEEECCCCCCCC >Mature Secondary Structure MRVVVIGAGIVGSSVAYEAAKAGAQVTVLEAGRIAGGASTSSFAWTNATGKRPQPYFALN CEEEEEECCCCCCHHHHHHHHCCCEEEEEECCCCCCCCCCCCEEEECCCCCCCCCEEEEE VAGMRAHLDLAREFGHAPWFHQTGSIEWYSDESDWPAQLDNADQMRDWGYGVEWISKSRL ECCHHHHHHHHHHCCCCCCEECCCCEEEECCCCCCCCCCCCHHHHHHCCCCHHHHHHHHC TELEPEIDHGAIKQSPLVYYPEEGWVHPALYAAWLLRAAKEKWNADIRPFSGVTSIDVQN CCCCCCCCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEHHH GVAKAVKTVDGAAFEADAIINCTGSWAAHVLEGVPAIPMASNMGIVGFTLPIATTLRRQF HHHHHHHHHCCCCEECCEEEEECCHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHHHHHHH HMDDLDVRPDGAGRLMIHKVSVDSLVTKMQPLNTQGPEAALLLDAVRKVLPAIQPDDMES CCCCCCCCCCCCCEEEEEEECHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCHHH IRTIVRPIPGDNLTCSGWVPGVDGYYVAVTHSGVSIAPHLGKAVAQEVVRGRLHESLTDF HHHHHCCCCCCCEEECCCCCCCCCEEEEEEECCCEECHHHHHHHHHHHHHHHHHHHHHHC RPDRFLAAKNGMGQRA CCCCEEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA