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The map label for this gene is yeaM [H]

Identifier: 222102697

GI number: 222102697

Start: 345322

End: 346077

Strand: Reverse

Name: yeaM [H]

Synonym: Avi_7370

Alternate gene names: 222102697

Gene position: 346077-345322 (Counterclockwise)

Preceding gene: 222102700

Following gene: 222102684

Centisome position: 54.78

GC content: 59.26

Gene sequence:

>756_bases
ATGCCCAGACATCCGTTCACCTTTCAGCGGGGCTTCAAACAACGCGGCGAAGGCTTGCCAATCCATGCCCACGACGAGGC
ACAACTCACCTTTGCCGCATCTGGGATGGTGCAGGTTCACACTGAGGAAGGCCGGTGGCTGGTACCTTCACAGCTCGCAG
TCTGGATTCCCGCTCGCGTTCCCCATCGCGTCGATGTCTTGACGGACGCCGATTTATGGATGGTCCATTGGGAGCCATCG
GCGGCGCAGGAATGGGCGCCTCCGGTACCGCTCGATCAGACATTCGCTTTACGCGTGACCCCGCTCATGCAGTCTTTGCT
CGAGGCGGCTTTCATGGCCGATGTCAGCCGAGAGAAGGGAGAACTCGTAGCCAAGCTCATGCTTCACGAACTGACGTCAA
CGGCCCACGCGCCAACATTCCTTCCCCTGCCGACAAGCACAATCGGGCTTCGGGTCGCAGACATGGCTCTCACCGATCAT
CAGAGCCTGATGAGCATAGATGAATTTGCATCGCGGGCCGCGACATCCGTGCGAACCTTAAGCCGATTGTTTCCTTCGGA
GACAGGGTTGACCTTCAAGGCCTGGCGACAACGGGCTCGGATCGTGCAGTCGATGGATCTACTCGCCAAAGGAAAGCCAA
TCGCCCGCGTGGCCGCCGACTTCGGGTTTTCCAGTGCCGCTTCGTTCTCGCACGCTTTCCGGCAGGTCACGGCCATGACG
CCAACCCAGTTTATGGGGGTGAAACCTTTAGCCTAG

Upstream 100 bases:

>100_bases
GGTTGTTGAGGTTTTGGTGTCGGCTCGACCATCGACAAGTCCTATGCTAGACGAACACCTTATCGATGTTCTGCCAATCT
CCATCGCCGAGAGGCCAATC

Downstream 100 bases:

>100_bases
AGTCTGTCACGTTCAGATTGAACCAGACAGACTCTAAATTCTCTTGTTTTCGTTTGTGTTTTCGGAAAAATCGGTTTTCC
CTTTTCCCTGACAAACTCTA

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 251; Mature: 250

Protein sequence:

>251_residues
MPRHPFTFQRGFKQRGEGLPIHAHDEAQLTFAASGMVQVHTEEGRWLVPSQLAVWIPARVPHRVDVLTDADLWMVHWEPS
AAQEWAPPVPLDQTFALRVTPLMQSLLEAAFMADVSREKGELVAKLMLHELTSTAHAPTFLPLPTSTIGLRVADMALTDH
QSLMSIDEFASRAATSVRTLSRLFPSETGLTFKAWRQRARIVQSMDLLAKGKPIARVAADFGFSSAASFSHAFRQVTAMT
PTQFMGVKPLA

Sequences:

>Translated_251_residues
MPRHPFTFQRGFKQRGEGLPIHAHDEAQLTFAASGMVQVHTEEGRWLVPSQLAVWIPARVPHRVDVLTDADLWMVHWEPS
AAQEWAPPVPLDQTFALRVTPLMQSLLEAAFMADVSREKGELVAKLMLHELTSTAHAPTFLPLPTSTIGLRVADMALTDH
QSLMSIDEFASRAATSVRTLSRLFPSETGLTFKAWRQRARIVQSMDLLAKGKPIARVAADFGFSSAASFSHAFRQVTAMT
PTQFMGVKPLA
>Mature_250_residues
PRHPFTFQRGFKQRGEGLPIHAHDEAQLTFAASGMVQVHTEEGRWLVPSQLAVWIPARVPHRVDVLTDADLWMVHWEPSA
AQEWAPPVPLDQTFALRVTPLMQSLLEAAFMADVSREKGELVAKLMLHELTSTAHAPTFLPLPTSTIGLRVADMALTDHQ
SLMSIDEFASRAATSVRTLSRLFPSETGLTFKAWRQRARIVQSMDLLAKGKPIARVAADFGFSSAASFSHAFRQVTAMTP
TQFMGVKPLA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1788091, Length=230, Percent_Identity=27.3913043478261, Blast_Score=95, Evalue=5e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR003313
- InterPro:   IPR018062
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF02311 AraC_binding [H]

EC number: NA

Molecular weight: Translated: 27806; Mature: 27675

Theoretical pI: Translated: 9.25; Mature: 9.25

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRHPFTFQRGFKQRGEGLPIHAHDEAQLTFAASGMVQVHTEEGRWLVPSQLAVWIPARV
CCCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCEEEEEECCCCEECCCCEEEEECCCC
PHRVDVLTDADLWMVHWEPSAAQEWAPPVPLDQTFALRVTPLMQSLLEAAFMADVSREKG
CCEEEEEECCCEEEEEECCCCHHHCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHH
ELVAKLMLHELTSTAHAPTFLPLPTSTIGLRVADMALTDHQSLMSIDEFASRAATSVRTL
HHHHHHHHHHHHHHCCCCEEECCCCCHHCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLFPSETGLTFKAWRQRARIVQSMDLLAKGKPIARVAADFGFSSAASFSHAFRQVTAMT
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
PTQFMGVKPLA
CHHHCCCCCCC
>Mature Secondary Structure 
PRHPFTFQRGFKQRGEGLPIHAHDEAQLTFAASGMVQVHTEEGRWLVPSQLAVWIPARV
CCCCCHHHHHHHHCCCCCCEEECCCCEEEEEECCEEEEEECCCCEECCCCEEEEECCCC
PHRVDVLTDADLWMVHWEPSAAQEWAPPVPLDQTFALRVTPLMQSLLEAAFMADVSREKG
CCEEEEEECCCEEEEEECCCCHHHCCCCCCCCCCHHEEHHHHHHHHHHHHHHHHHHHHHH
ELVAKLMLHELTSTAHAPTFLPLPTSTIGLRVADMALTDHQSLMSIDEFASRAATSVRTL
HHHHHHHHHHHHHHCCCCEEECCCCCHHCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
SRLFPSETGLTFKAWRQRARIVQSMDLLAKGKPIARVAADFGFSSAASFSHAFRQVTAMT
HHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
PTQFMGVKPLA
CHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]