Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

Click here to switch to the map view.

The map label for this gene is 222102686

Identifier: 222102686

GI number: 222102686

Start: 333642

End: 335015

Strand: Direct

Name: 222102686

Synonym: Avi_7356

Alternate gene names: NA

Gene position: 333642-335015 (Clockwise)

Preceding gene: 222102685

Following gene: 222102687

Centisome position: 52.81

GC content: 58.66

Gene sequence:

>1374_bases
ATGGGCCTGAACAATCAGAATCTGCACAATGTGCTGTTTCGCGGTTTCCTGAAGCCCTGGGAGGATTATACCGGTGCCAA
GATCACCTGGATCGACCTGGCCCAGGCCGATTACAATCCCCGCCTTCAACAAGCGATTGCCACCGGCACCGTGGATTTTG
ACCTTCTGGAAATGGGCGCTCCGTTTGAAGGCGATGTTTGCGGCAAGGGCCTTGCCTCGGAAATGCCGGACTGGGTGAAG
GCCCAGATCGACATGGAGGATTACGTCGATTACCTGAAGGCCCCGGTCGGCACCTGGGGTGGCAAAGTCTACCGCGTCTC
GGTGGATGGCGATTGCCACAACTTCAACTACCGTAAGGATTATTTCACCGACGCCGATCTCGCCAAGGCCTGGAAAGCTG
AAGGCCATGCCGGCGAATGGGGCGTGCCGAAAACCTGGCAGCAGGTGCAGGAAGCAACCAAGTTCCTCAAAGGCAAGACA
ATCGCCGGAGCCGATGCCATCGGCTATCTCGATGCACCAAAGGCCTGGGGTGGCTTTGGCTTCTACTTCCTCGGCAGCCG
CGCAACGGCCTATGCCAAGCACCCGGATGACAAGGCCTGGCTGTTCGACATCGATACGATGAAGCCGCGCATCAACAATC
CTGCCTGGGTGCGCGCCATCCAGGACGTTGTCGATGCCCTACCTTCCGAAGCCGGTGACCAGTTGAACGCCGATCCCGGC
ACGACGGCGTTCCAGCAGTTTCTGGCCGGAACCGGCTCCATGGTCTCCTGGTGGGGCGATGTCGGGCAAAGCGCCCAAAC
CAGCGATAGTTCGGTGGTGGGCGATACCATCGCCTTCGACATTCTTCCCGGCTCCGACGATGTCTATAATGCCAAGACCG
GGAAATGGGAGACGCTGGCCAGCGGGCCGAACTATGCGCCCAACATGGCCTATCTGGGCTGGGGCGTTTACGTCATGGCC
CGTGTTGACAAGGATGAGAAGAAAAAGAAGGCAGCCTGGAGTGCGGCGGCCCATCTCGGCGGCAAGGATCTCGCCTTGTG
GACGGCGGCCTATCCCTCCGGCTTCCAGTGCTATCGCAAGAGCCAGTTCGATATCAAGGAATGGGTGGCCGCAGGCTATG
AGGAGGCGTTCATCAGCAATTATCTCGCCTCCCAGTCGAAGTCCTACAACCATCCGAACGCCGCCATCGAACCCCGTATT
CCTGGTATCTTCCAATATTACAGCGTGGCGGAAGACGAATTGGCAAAAGTGTTTGCGGGAAGGGTGAAGCCCCAGGAAGG
TGCCGATGCGATTGCGGCGGCCTGGGAAAAAATCACCGATCAGCTTGGCCGCGACAAGCAGATATCACTCTACAAGGCCT
CGCTCGGCGTTTGA

Upstream 100 bases:

>100_bases
TCCCACCGATGCCGACTGGCAAAAAGTCGGCGAGCTGTGCCTGGAGGCCACGAAAAAGACCGTCAAGAAGGGAGAGTTCG
CTGGCGTCGAACTGTCCTTC

Downstream 100 bases:

>100_bases
GCCAAAACCGACGGCAGGAAACTGCCGTTGGTGTTCCCAAACGGCGTCAGGCGGCTTTCTCATTCCGCCTGACGTCCATT
CATCAGCCTAAAGCCAATCT

Product: ABC transporter, binding protein

Products: NA

Alternate protein names: Twin-Arginine Translocation Pathway Signal

Number of amino acids: Translated: 457; Mature: 456

Protein sequence:

>457_residues
MGLNNQNLHNVLFRGFLKPWEDYTGAKITWIDLAQADYNPRLQQAIATGTVDFDLLEMGAPFEGDVCGKGLASEMPDWVK
AQIDMEDYVDYLKAPVGTWGGKVYRVSVDGDCHNFNYRKDYFTDADLAKAWKAEGHAGEWGVPKTWQQVQEATKFLKGKT
IAGADAIGYLDAPKAWGGFGFYFLGSRATAYAKHPDDKAWLFDIDTMKPRINNPAWVRAIQDVVDALPSEAGDQLNADPG
TTAFQQFLAGTGSMVSWWGDVGQSAQTSDSSVVGDTIAFDILPGSDDVYNAKTGKWETLASGPNYAPNMAYLGWGVYVMA
RVDKDEKKKKAAWSAAAHLGGKDLALWTAAYPSGFQCYRKSQFDIKEWVAAGYEEAFISNYLASQSKSYNHPNAAIEPRI
PGIFQYYSVAEDELAKVFAGRVKPQEGADAIAAAWEKITDQLGRDKQISLYKASLGV

Sequences:

>Translated_457_residues
MGLNNQNLHNVLFRGFLKPWEDYTGAKITWIDLAQADYNPRLQQAIATGTVDFDLLEMGAPFEGDVCGKGLASEMPDWVK
AQIDMEDYVDYLKAPVGTWGGKVYRVSVDGDCHNFNYRKDYFTDADLAKAWKAEGHAGEWGVPKTWQQVQEATKFLKGKT
IAGADAIGYLDAPKAWGGFGFYFLGSRATAYAKHPDDKAWLFDIDTMKPRINNPAWVRAIQDVVDALPSEAGDQLNADPG
TTAFQQFLAGTGSMVSWWGDVGQSAQTSDSSVVGDTIAFDILPGSDDVYNAKTGKWETLASGPNYAPNMAYLGWGVYVMA
RVDKDEKKKKAAWSAAAHLGGKDLALWTAAYPSGFQCYRKSQFDIKEWVAAGYEEAFISNYLASQSKSYNHPNAAIEPRI
PGIFQYYSVAEDELAKVFAGRVKPQEGADAIAAAWEKITDQLGRDKQISLYKASLGV
>Mature_456_residues
GLNNQNLHNVLFRGFLKPWEDYTGAKITWIDLAQADYNPRLQQAIATGTVDFDLLEMGAPFEGDVCGKGLASEMPDWVKA
QIDMEDYVDYLKAPVGTWGGKVYRVSVDGDCHNFNYRKDYFTDADLAKAWKAEGHAGEWGVPKTWQQVQEATKFLKGKTI
AGADAIGYLDAPKAWGGFGFYFLGSRATAYAKHPDDKAWLFDIDTMKPRINNPAWVRAIQDVVDALPSEAGDQLNADPGT
TAFQQFLAGTGSMVSWWGDVGQSAQTSDSSVVGDTIAFDILPGSDDVYNAKTGKWETLASGPNYAPNMAYLGWGVYVMAR
VDKDEKKKKAAWSAAAHLGGKDLALWTAAYPSGFQCYRKSQFDIKEWVAAGYEEAFISNYLASQSKSYNHPNAAIEPRIP
GIFQYYSVAEDELAKVFAGRVKPQEGADAIAAAWEKITDQLGRDKQISLYKASLGV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 50277; Mature: 50146

Theoretical pI: Translated: 4.83; Mature: 4.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGLNNQNLHNVLFRGFLKPWEDYTGAKITWIDLAQADYNPRLQQAIATGTVDFDLLEMGA
CCCCCCHHHHHHHHHHHCCHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHCCC
PFEGDVCGKGLASEMPDWVKAQIDMEDYVDYLKAPVGTWGGKVYRVSVDGDCHNFNYRKD
CCCCCCCCCCHHHHCCCHHHEECCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCC
YFTDADLAKAWKAEGHAGEWGVPKTWQQVQEATKFLKGKTIAGADAIGYLDAPKAWGGFG
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
FYFLGSRATAYAKHPDDKAWLFDIDTMKPRINNPAWVRAIQDVVDALPSEAGDQLNADPG
EEEECCCCEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
TTAFQQFLAGTGSMVSWWGDVGQSAQTSDSSVVGDTIAFDILPGSDDVYNAKTGKWETLA
HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEC
SGPNYAPNMAYLGWGVYVMARVDKDEKKKKAAWSAAAHLGGKDLALWTAAYPSGFQCYRK
CCCCCCCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHC
SQFDIKEWVAAGYEEAFISNYLASQSKSYNHPNAAIEPRIPGIFQYYSVAEDELAKVFAG
CCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
RVKPQEGADAIAAAWEKITDQLGRDKQISLYKASLGV
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
>Mature Secondary Structure 
GLNNQNLHNVLFRGFLKPWEDYTGAKITWIDLAQADYNPRLQQAIATGTVDFDLLEMGA
CCCCCHHHHHHHHHHHCCHHCCCCCEEEEEEEECCCCCHHHHHHHHHCCCCHHHHHCCC
PFEGDVCGKGLASEMPDWVKAQIDMEDYVDYLKAPVGTWGGKVYRVSVDGDCHNFNYRKD
CCCCCCCCCCHHHHCCCHHHEECCHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCC
YFTDADLAKAWKAEGHAGEWGVPKTWQQVQEATKFLKGKTIAGADAIGYLDAPKAWGGFG
CCCCHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCE
FYFLGSRATAYAKHPDDKAWLFDIDTMKPRINNPAWVRAIQDVVDALPSEAGDQLNADPG
EEEECCCCEEECCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
TTAFQQFLAGTGSMVSWWGDVGQSAQTSDSSVVGDTIAFDILPGSDDVYNAKTGKWETLA
HHHHHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEC
SGPNYAPNMAYLGWGVYVMARVDKDEKKKKAAWSAAAHLGGKDLALWTAAYPSGFQCYRK
CCCCCCCCCEEECCEEEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHC
SQFDIKEWVAAGYEEAFISNYLASQSKSYNHPNAAIEPRIPGIFQYYSVAEDELAKVFAG
CCCCHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHC
RVKPQEGADAIAAAWEKITDQLGRDKQISLYKASLGV
CCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA