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The map label for this gene is xylR [H]

Identifier: 222102666

GI number: 222102666

Start: 308759

End: 309997

Strand: Reverse

Name: xylR [H]

Synonym: Avi_7333

Alternate gene names: 222102666

Gene position: 309997-308759 (Counterclockwise)

Preceding gene: 222102667

Following gene: 222102664

Centisome position: 49.07

GC content: 59.24

Gene sequence:

>1239_bases
ATGAGTTATTCCGGAGCCAATGGCGAACAGGCCGCAGCCCTCAACAGGGCCATCATCCTGAACGCCATTCACCGTGGTGG
GCCGATCTCGCGCACCGAAATTGCCAAGCTTTCGCGCCTGACTAAGCAGGCTGTCACCCGGATTGTCGATAAGCTGCTGG
ATGAAGGGCTGGTGATGGAAGCGCGCCGCCGCCAAGGCTTGCGGGGTCAACCCGCCATCGAGCTGGAGATTGACCCGGAA
GGTGCCTTTGCCATCGGAGCCAATATTGACCGTGATCACCTGACCATTGTGGCGGTGGATGCGGTGGGCAATGTGCGCGG
GCGTATTCACCATGAAGCGCGGTTTTTGCTGCCGGATGCCTTTGTAAAGCTGATGGAAGACGCCGTATCGTCCTTCCTGC
GTCGCAAGGTTATCCACGAATCGAGGCTTGCGGGCATTGGCCTTGCCATTCCCGACTGGCTAGGTGAGGTGCAGGTGATT
GGCCTGCCAGACACATATAGCCAGTGGAACGGCTTTGACGTGCGCGCCGCGCTGTCGCATATCACCGACCATCCCATCTA
TATCGACAATGACGCCAATGCGGCGGCTTTGGGCGAGATTGAATATGGGCTGGGCACCGAAATGCGCAGTTTTTTCTATA
TTCTCATATCGGCCTGTCTTGGCGGTAGTCTGGTGATTGACGGTATGCGCCACAAGGGCGCAGGCGGGCTGGGTGGGGAA
ATCGGCTGGTTGCCCACGGCGGTCACAACCGGCCCATTGGCCGGTGAAACCAGACCGTTGGGCGATATGCTGTCGATGTT
TGTGCTGCTCGATTACCTTGCTGACAATGGTGTGGATGTGGCGACACCTGCAGATCTGTTGACGCTGGATGCACGCGGAC
GCGCCCTTCTCAGCGGTTGGCTGAAGAAAATGGCCGTCAACCTTGCCGAAGCTGTCAGCGACATCGGCATGGTGGTGGAC
CCCGATGGCATTATTCTGGGTGGACGCCTGCCGGTGCGGCTGATTGATGAATTGCTGCTCTACGTGCATGAGGAAATCAG
CCGTCGGGGCGCGTTGGCCCCAAGCCTACACCGTGCGGCAGCCTCAGAGGATGCGGCAGCCCTTGGTGCTGCCGCCATGG
CGCTCGCCGACCGGCTCTGTCTTCCCTCTGCCGATTCTGCCCATCTCAGCCGTTCACCGCTGACGACAGCGATACGGCCT
GCATCGATCAATTCGGTTTTGGCAGCAGCAGTTCGATAA

Upstream 100 bases:

>100_bases
CGTCTGTCGAAAACCGCGTGAAAATGCTTTCGCCTCGCACGTCTATAGTGCATGGTTTCCTCGCCGCCGCAGCCCGGCGG
CGAGGAGATTGACGATTACA

Downstream 100 bases:

>100_bases
ACGGCGCAACAGCAGCACCATAAGCGGCGTCGCGGTCTGGAAAGCTTAAAGGGCGTACGGGCGGAATCCAGGCTGCGGGC
ACAAAATATCGCTCTTTGCC

Product: transcriptional regulator ROK family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 411

Protein sequence:

>412_residues
MSYSGANGEQAAALNRAIILNAIHRGGPISRTEIAKLSRLTKQAVTRIVDKLLDEGLVMEARRRQGLRGQPAIELEIDPE
GAFAIGANIDRDHLTIVAVDAVGNVRGRIHHEARFLLPDAFVKLMEDAVSSFLRRKVIHESRLAGIGLAIPDWLGEVQVI
GLPDTYSQWNGFDVRAALSHITDHPIYIDNDANAAALGEIEYGLGTEMRSFFYILISACLGGSLVIDGMRHKGAGGLGGE
IGWLPTAVTTGPLAGETRPLGDMLSMFVLLDYLADNGVDVATPADLLTLDARGRALLSGWLKKMAVNLAEAVSDIGMVVD
PDGIILGGRLPVRLIDELLLYVHEEISRRGALAPSLHRAAASEDAAALGAAAMALADRLCLPSADSAHLSRSPLTTAIRP
ASINSVLAAAVR

Sequences:

>Translated_412_residues
MSYSGANGEQAAALNRAIILNAIHRGGPISRTEIAKLSRLTKQAVTRIVDKLLDEGLVMEARRRQGLRGQPAIELEIDPE
GAFAIGANIDRDHLTIVAVDAVGNVRGRIHHEARFLLPDAFVKLMEDAVSSFLRRKVIHESRLAGIGLAIPDWLGEVQVI
GLPDTYSQWNGFDVRAALSHITDHPIYIDNDANAAALGEIEYGLGTEMRSFFYILISACLGGSLVIDGMRHKGAGGLGGE
IGWLPTAVTTGPLAGETRPLGDMLSMFVLLDYLADNGVDVATPADLLTLDARGRALLSGWLKKMAVNLAEAVSDIGMVVD
PDGIILGGRLPVRLIDELLLYVHEEISRRGALAPSLHRAAASEDAAALGAAAMALADRLCLPSADSAHLSRSPLTTAIRP
ASINSVLAAAVR
>Mature_411_residues
SYSGANGEQAAALNRAIILNAIHRGGPISRTEIAKLSRLTKQAVTRIVDKLLDEGLVMEARRRQGLRGQPAIELEIDPEG
AFAIGANIDRDHLTIVAVDAVGNVRGRIHHEARFLLPDAFVKLMEDAVSSFLRRKVIHESRLAGIGLAIPDWLGEVQVIG
LPDTYSQWNGFDVRAALSHITDHPIYIDNDANAAALGEIEYGLGTEMRSFFYILISACLGGSLVIDGMRHKGAGGLGGEI
GWLPTAVTTGPLAGETRPLGDMLSMFVLLDYLADNGVDVATPADLLTLDARGRALLSGWLKKMAVNLAEAVSDIGMVVDP
DGIILGGRLPVRLIDELLLYVHEEISRRGALAPSLHRAAASEDAAALGAAAMALADRLCLPSADSAHLSRSPLTTAIRPA
SINSVLAAAVR

Specific function: Transcriptional repressor of xylose-utilizing enzymes [H]

COG id: COG1940

COG function: function code KG; Transcriptional regulator/sugar kinase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ROK (nagC/xylR) family [H]

Homologues:

Organism=Escherichia coli, GI1786891, Length=354, Percent_Identity=22.316384180791, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI1787878, Length=240, Percent_Identity=24.5833333333333, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000600
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00480 ROK [H]

EC number: NA

Molecular weight: Translated: 43793; Mature: 43662

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYSGANGEQAAALNRAIILNAIHRGGPISRTEIAKLSRLTKQAVTRIVDKLLDEGLVME
CCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ARRRQGLRGQPAIELEIDPEGAFAIGANIDRDHLTIVAVDAVGNVRGRIHHEARFLLPDA
HHHHCCCCCCCCEEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
FVKLMEDAVSSFLRRKVIHESRLAGIGLAIPDWLGEVQVIGLPDTYSQWNGFDVRAALSH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCCCCCCCHHHHHHHH
ITDHPIYIDNDANAAALGEIEYGLGTEMRSFFYILISACLGGSLVIDGMRHKGAGGLGGE
CCCCCEEEECCCCCEEECCCHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
IGWLPTAVTTGPLAGETRPLGDMLSMFVLLDYLADNGVDVATPADLLTLDARGRALLSGW
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
LKKMAVNLAEAVSDIGMVVDPDGIILGGRLPVRLIDELLLYVHEEISRRGALAPSLHRAA
HHHHHHHHHHHHHHCCEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ASEDAAALGAAAMALADRLCLPSADSAHLSRSPLTTAIRPASINSVLAAAVR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCC
>Mature Secondary Structure 
SYSGANGEQAAALNRAIILNAIHRGGPISRTEIAKLSRLTKQAVTRIVDKLLDEGLVME
CCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
ARRRQGLRGQPAIELEIDPEGAFAIGANIDRDHLTIVAVDAVGNVRGRIHHEARFLLPDA
HHHHCCCCCCCCEEEEECCCCCEEECCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHH
FVKLMEDAVSSFLRRKVIHESRLAGIGLAIPDWLGEVQVIGLPDTYSQWNGFDVRAALSH
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCEEEEECCCCCCCCCCCHHHHHHHH
ITDHPIYIDNDANAAALGEIEYGLGTEMRSFFYILISACLGGSLVIDGMRHKGAGGLGGE
CCCCCEEEECCCCCEEECCCHHCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCC
IGWLPTAVTTGPLAGETRPLGDMLSMFVLLDYLADNGVDVATPADLLTLDARGRALLSGW
CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHH
LKKMAVNLAEAVSDIGMVVDPDGIILGGRLPVRLIDELLLYVHEEISRRGALAPSLHRAA
HHHHHHHHHHHHHHCCEEECCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
ASEDAAALGAAAMALADRLCLPSADSAHLSRSPLTTAIRPASINSVLAAAVR
CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2544559 [H]