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The map label for this gene is ydhC [H]

Identifier: 222102593

GI number: 222102593

Start: 200266

End: 200940

Strand: Direct

Name: ydhC [H]

Synonym: Avi_7238

Alternate gene names: 222102593

Gene position: 200266-200940 (Clockwise)

Preceding gene: 222102592

Following gene: 222102594

Centisome position: 31.7

GC content: 58.22

Gene sequence:

>675_bases
ATGCCCGTCGTTCAATCCTCCATCGCAATGCAGGCCTCAACAGCTGAGGAAGAGGCCTATCTGCATATGCAACAGGCATT
GCGCCGTGGTCGCTATAAGCCGGGTGACCGCCTGATCGCCGAGGAGATTGCTGCGGAAATCGGTATGAGCCGCATGCCGG
TGCGGGAGGCATTTCGGCGACTTGCCTCCGATGGGCTGGTGACACTTCGCCCCAATCGCGGCTGTGTGGTGGCGGGTCTG
ACACTCGCTGAACTTCAAGAGGCATTCGAAATTCGCTCTGTTTTGGAAGGTCTTGCCGTGCGCATCGCAATGCCGCGCAT
GAATGCCGAGACCTTCGAAGAGCTTGAGCGCTTGTTGACCCTGATGGAGCGCGCAGGCGGAAGCGGAAGCAGCGACTGGG
TTTTGCGGCATCAGGAGTTCCACGCTTTTATCTATGGGCTAAGTGGCCGCCCGAAGCTCATCCGGCAGATCACGGCGCTG
CATGTGGTGATAGAACCCTATATGCGGATCTGGTTCGACTATGTTGATAAGCCACTATCGGCCCGTCAGGAGCACGATAC
GCTGATTGAGGCCCTGAGATCCGGTGATGCCCGCCGAGCAGAGGCCGTAATGCAGGAACATATTGTCGAAACAGCATCAT
TGCTGGCCGACTACGCAAGTCCCGCTCGGCGCTGA

Upstream 100 bases:

>100_bases
ACCGTGCCGAGCTGCTGTTTCCAGGGCAGCAATCAAAAGCCCTTGACGGGAGGAAACAGCAATGATTGGATAATTGGATA
CAAAAATCCAGTGAGCCAAA

Downstream 100 bases:

>100_bases
ACGCTGATCGGTCACTATGTCCGAAGCCGGAGGCAACATCCGGCAAGGATGGGGAACCGCCGTAAAAACGGCTCAAAAAA
GAGGAAAAGTCATGACGTTT

Product: transcriptional regulator GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 223

Protein sequence:

>224_residues
MPVVQSSIAMQASTAEEEAYLHMQQALRRGRYKPGDRLIAEEIAAEIGMSRMPVREAFRRLASDGLVTLRPNRGCVVAGL
TLAELQEAFEIRSVLEGLAVRIAMPRMNAETFEELERLLTLMERAGGSGSSDWVLRHQEFHAFIYGLSGRPKLIRQITAL
HVVIEPYMRIWFDYVDKPLSARQEHDTLIEALRSGDARRAEAVMQEHIVETASLLADYASPARR

Sequences:

>Translated_224_residues
MPVVQSSIAMQASTAEEEAYLHMQQALRRGRYKPGDRLIAEEIAAEIGMSRMPVREAFRRLASDGLVTLRPNRGCVVAGL
TLAELQEAFEIRSVLEGLAVRIAMPRMNAETFEELERLLTLMERAGGSGSSDWVLRHQEFHAFIYGLSGRPKLIRQITAL
HVVIEPYMRIWFDYVDKPLSARQEHDTLIEALRSGDARRAEAVMQEHIVETASLLADYASPARR
>Mature_223_residues
PVVQSSIAMQASTAEEEAYLHMQQALRRGRYKPGDRLIAEEIAAEIGMSRMPVREAFRRLASDGLVTLRPNRGCVVAGLT
LAELQEAFEIRSVLEGLAVRIAMPRMNAETFEELERLLTLMERAGGSGSSDWVLRHQEFHAFIYGLSGRPKLIRQITALH
VVIEPYMRIWFDYVDKPLSARQEHDTLIEALRSGDARRAEAVMQEHIVETASLLADYASPARR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081914, Length=194, Percent_Identity=29.8969072164948, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI87082149, Length=201, Percent_Identity=26.3681592039801, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787821, Length=180, Percent_Identity=26.6666666666667, Blast_Score=69, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25260; Mature: 25129

Theoretical pI: Translated: 6.52; Mature: 6.52

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPVVQSSIAMQASTAEEEAYLHMQQALRRGRYKPGDRLIAEEIAAEIGMSRMPVREAFRR
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
LASDGLVTLRPNRGCVVAGLTLAELQEAFEIRSVLEGLAVRIAMPRMNAETFEELERLLT
HHHCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LMERAGGSGSSDWVLRHQEFHAFIYGLSGRPKLIRQITALHVVIEPYMRIWFDYVDKPLS
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ARQEHDTLIEALRSGDARRAEAVMQEHIVETASLLADYASPARR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
PVVQSSIAMQASTAEEEAYLHMQQALRRGRYKPGDRLIAEEIAAEIGMSRMPVREAFRR
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHH
LASDGLVTLRPNRGCVVAGLTLAELQEAFEIRSVLEGLAVRIAMPRMNAETFEELERLLT
HHHCCEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
LMERAGGSGSSDWVLRHQEFHAFIYGLSGRPKLIRQITALHVVIEPYMRIWFDYVDKPLS
HHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
ARQEHDTLIEALRSGDARRAEAVMQEHIVETASLLADYASPARR
HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]