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The map label for this gene is yliC [C]

Identifier: 222102550

GI number: 222102550

Start: 148964

End: 149953

Strand: Direct

Name: yliC [C]

Synonym: Avi_7182

Alternate gene names: 222102550

Gene position: 148964-149953 (Clockwise)

Preceding gene: 222102537

Following gene: 222102551

Centisome position: 23.58

GC content: 58.08

Gene sequence:

>990_bases
ATGACCGCATCAAACCGAATATTGAAACGCGCAAGCCGTGTGACGTTGCAGGCCATACCCACCGTTGTGGGCATCGTGAT
CCTGAACTTTTTTCTGCTGCAACTGGCACCGGGCGATGCCGCCGATGTGCTGGCCGCAGAGGCTGGCTCCGCCACCGTCG
AGACAATGGCGGATATTCGCGCGCGCTTTGGTCTTGATCTGCCCGTGCTGCACCAACTGGGCAATTATCTTGGTAATCTT
GCTCATTTCAGTCTGGGGTATTCGCCGCGCTATGGCATGCCGGTGGCCGAGCTGATTGGGCAACGACTGCCCGGCACATT
GGTGCTGATGGGGGCGGCCTTTATCATTGCGCTTGTGCTTGGGGTGGTGCTTGGCTCCGTCATGGCGGTGTTTTCGGGTC
GCCTGCCGGACCGGGTCATCTCCCTTGGTTCGCTGCTGTTTTATTCCGTACCCGGTTTCTGGATCGGTTTGATGCTGATC
CTGCTGTTTTCCGTCAAGCTGGGTTGGTTGCCTTCCGGCGGTGATAGCACCATTGGCAGCCCGCTGACCGGCTATGCGGC
GCTTTTGGATCGCGCTCGGTATATTGTTCTGCCAGCAACTTCGCTGTCGCTTTATTATTTGGCGATCTATGCCCGACTCA
CCCGCGCCGCCATGCTGGAAGTGAAATCACAGGACTATGTGCGCACCGCCCGCGCCAAGGGTGTCACACCGCTTCGGCTG
ACGTTGCGCCATATCCTGCGCAACGCTTTGATCCCTATCACCACCATGGCCGGAATGCATCTTGGCGGCATGCTGGGTGG
CGCTGTTGTGGTGGAAACCGTGTTCAGCTGGCCGGGTCTGGGGCGGCTGGCATTTGAAGCGGTCATGGCCCGTGATTTCA
GCGTGCTTTTGGGAATTCTGCTGCTGTCATCCTTTTTGGTGATCATCATCAATGCTGCCGTGGATCTGTTTCAGGCCTGG
CTCGACCCGCGGATTGGAGAAAGCCAATGA

Upstream 100 bases:

>100_bases
TTTCAGAAAAATATTCTTTTCTCATGTTTGACAAAATATATAAAATTAGTCAACTACTGACATAGAACTCAATTTCAAAA
CTGCACTTCAGGCGATAGTG

Downstream 100 bases:

>100_bases
CAATTATCAATGCAACGACACCGCTCGCCGAGGCTACGCGCCAGCGTGAAGGGGAAAAGGCAAGCGTTGAAACGGCCAAA
GAGGCCAAAGCCCCCAAAGG

Product: ABC transporter membrane spanning protein (oligopeptide)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 329; Mature: 328

Protein sequence:

>329_residues
MTASNRILKRASRVTLQAIPTVVGIVILNFFLLQLAPGDAADVLAAEAGSATVETMADIRARFGLDLPVLHQLGNYLGNL
AHFSLGYSPRYGMPVAELIGQRLPGTLVLMGAAFIIALVLGVVLGSVMAVFSGRLPDRVISLGSLLFYSVPGFWIGLMLI
LLFSVKLGWLPSGGDSTIGSPLTGYAALLDRARYIVLPATSLSLYYLAIYARLTRAAMLEVKSQDYVRTARAKGVTPLRL
TLRHILRNALIPITTMAGMHLGGMLGGAVVVETVFSWPGLGRLAFEAVMARDFSVLLGILLLSSFLVIIINAAVDLFQAW
LDPRIGESQ

Sequences:

>Translated_329_residues
MTASNRILKRASRVTLQAIPTVVGIVILNFFLLQLAPGDAADVLAAEAGSATVETMADIRARFGLDLPVLHQLGNYLGNL
AHFSLGYSPRYGMPVAELIGQRLPGTLVLMGAAFIIALVLGVVLGSVMAVFSGRLPDRVISLGSLLFYSVPGFWIGLMLI
LLFSVKLGWLPSGGDSTIGSPLTGYAALLDRARYIVLPATSLSLYYLAIYARLTRAAMLEVKSQDYVRTARAKGVTPLRL
TLRHILRNALIPITTMAGMHLGGMLGGAVVVETVFSWPGLGRLAFEAVMARDFSVLLGILLLSSFLVIIINAAVDLFQAW
LDPRIGESQ
>Mature_328_residues
TASNRILKRASRVTLQAIPTVVGIVILNFFLLQLAPGDAADVLAAEAGSATVETMADIRARFGLDLPVLHQLGNYLGNLA
HFSLGYSPRYGMPVAELIGQRLPGTLVLMGAAFIIALVLGVVLGSVMAVFSGRLPDRVISLGSLLFYSVPGFWIGLMLIL
LFSVKLGWLPSGGDSTIGSPLTGYAALLDRARYIVLPATSLSLYYLAIYARLTRAAMLEVKSQDYVRTARAKGVTPLRLT
LRHILRNALIPITTMAGMHLGGMLGGAVVVETVFSWPGLGRLAFEAVMARDFSVLLGILLLSSFLVIIINAAVDLFQAWL
DPRIGESQ

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787053, Length=321, Percent_Identity=38.6292834890966, Blast_Score=207, Evalue=5e-55,
Organism=Escherichia coli, GI1789965, Length=328, Percent_Identity=37.5, Blast_Score=206, Evalue=2e-54,
Organism=Escherichia coli, GI1789888, Length=324, Percent_Identity=37.3456790123457, Blast_Score=197, Evalue=6e-52,
Organism=Escherichia coli, GI1787497, Length=322, Percent_Identity=34.7826086956522, Blast_Score=181, Evalue=6e-47,
Organism=Escherichia coli, GI1787761, Length=322, Percent_Identity=38.8198757763975, Blast_Score=179, Evalue=3e-46,
Organism=Escherichia coli, GI1787550, Length=265, Percent_Identity=32.0754716981132, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1788504, Length=361, Percent_Identity=27.7008310249307, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 35252; Mature: 35120

Theoretical pI: Translated: 10.14; Mature: 10.14

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTASNRILKRASRVTLQAIPTVVGIVILNFFLLQLAPGDAADVLAAEAGSATVETMADIR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH
ARFGLDLPVLHQLGNYLGNLAHFSLGYSPRYGMPVAELIGQRLPGTLVLMGAAFIIALVL
HHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHH
GVVLGSVMAVFSGRLPDRVISLGSLLFYSVPGFWIGLMLILLFSVKLGWLPSGGDSTIGS
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PLTGYAALLDRARYIVLPATSLSLYYLAIYARLTRAAMLEVKSQDYVRTARAKGVTPLRL
CHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
TLRHILRNALIPITTMAGMHLGGMLGGAVVVETVFSWPGLGRLAFEAVMARDFSVLLGIL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
LLSSFLVIIINAAVDLFQAWLDPRIGESQ
HHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TASNRILKRASRVTLQAIPTVVGIVILNFFLLQLAPGDAADVLAAEAGSATVETMADIR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHH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HHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11756688 [H]