| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is yxeK [H]
Identifier: 222102527
GI number: 222102527
Start: 122247
End: 123653
Strand: Direct
Name: yxeK [H]
Synonym: Avi_7155
Alternate gene names: 222102527
Gene position: 122247-123653 (Clockwise)
Preceding gene: 222102524
Following gene: 222102528
Centisome position: 19.35
GC content: 54.8
Gene sequence:
>1407_bases ATGACAAAGACGATACGCTTCAATGCCTTTGAGATGAATTGCGTTGGCCACCAATCGCCGGGTCTATGGCGGCATCCGCG CGATCGGTCCTGGCAATATAAGGATCTGGAATATTGGACGGATCTTGCCAAAATTCTGGAGACTGGCTTTTTTGAATCCA TCTTCATCGCTGACGTTATCGGTTACTATGATGTCTATAAGGGTAATCTGGATAATGCGCTGCTTCAGGGCGTGCAGATA CCCGTCAACGACCCGCTGCAATTGGCCAATCCCATTGCGCAGGCAACAAAGCATCTTGGCATTGGCATCACCGCTTCCAC CAGTTTCGAGCATCCCTATACCTTTGCACGCAGGCTCTCTACGGCGGACCACCATACCAAAGGGCGTGTGGGCTGGAATA TCGTCACGTCCTATCTGGAAAGCGGTGCCAAAAATGTTGGTCAGGGTGGCTTGCGCTCCCATGACAATCGCTATGATGTG GCGACAGAGTATGTCGAGGTTCTCTACAAACTGTTCGAGGGCAGCTGGGAAGAAGGGGCGGTGATCCGCGATAAGGAGCG CGGCATCTTTGCTGACCCTGCCAAAATTCACGAGATCGGCCATAAGGGCAAATATTTCGAGGTTCCGGGCTATCATTTGA GTGAACCCTCGCCGCAGCGCACACCGGTGCTGTTTCAGGCGGGGGCCTCGGGTGCGGGCAAGCAATTTGCCGCAGGCCAC GCCGAATGCGTGTTTATCTCAACGCCGTTGAAGGATGCCACTCGCGCTTATGTCGCGGATATTCGCAAGCGTGCAGCGGA ACAGGGCCGTGATCCGAAGAAGGTGCTGATCTATGCCATGGCCACCATCATCGTTGATGAGACAGATGAAAAGGCGCGGG CGAAATACGAAGACTATGCAAAATATGCCTCCTATGATGGTGCGCTGGTGTTGATGTCGGGCTGGACCGGGATTGATTTT GGTCACTACCAGCCGTCTGACACCGTGAAAAAGGTCAAGACCAACGCGATTATCTCCGCTGTCGAGCATCTGTCCGAAGG CAATAAAGTCTGGACCATAGAAGAATTGGCGAAGTGGGGCGGGATTGGCGGCCTTGGGCCGTTGTTTGTGGGATCACCCA CCACGATTGCCGATCTGTTGCAGGAATGGGTCGAAGAAACCGATATCGATGGTTTCAACCTCGCCTATGCGCTGGCGCAC GACAGTTTTGCCGATGTGATTGGCTATGTGGTGCCGGAGCTGCAAAAGCGCGGCGTTTATGCCACCCAGTACCGCGAGGG GACTTTGCGCGAAAAACTGTTTGGCGAGGGGCCATACTTGCCACGAACCCACCCCGCCCATCAGTTCCGCGACATTGAGC GCGTCAAGCGTGAGGAGGCAAACAAGGCTTCCGGCGAGGCTGCCTGA
Upstream 100 bases:
>100_bases AATTATACCTCTATAAAATCTATAAAGATAATAGATTTTCTGTCTTGTCCGTCAGCCTGATCTTACGCTGCACCAGCATT AGACACGGCTGGAAACTCTC
Downstream 100 bases:
>100_bases TGACAGGTTAAGCCGCCCGCTCTACCGAAATATCTCTTGGCCAATATGCAAAACGCCACGCCGATCGAGCTGTGGCGAAG GACTTTGTTTGTCCGCTTCA
Product: nitrilotriacetate monooxygenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 467
Protein sequence:
>468_residues MTKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVIGYYDVYKGNLDNALLQGVQI PVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLSTADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDV ATEYVEVLYKLFEGSWEEGAVIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYAKYASYDGALVLMSGWTGIDF GHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWGGIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAH DSFADVIGYVVPELQKRGVYATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA
Sequences:
>Translated_468_residues MTKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVIGYYDVYKGNLDNALLQGVQI PVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLSTADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDV ATEYVEVLYKLFEGSWEEGAVIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYAKYASYDGALVLMSGWTGIDF GHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWGGIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAH DSFADVIGYVVPELQKRGVYATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA >Mature_467_residues TKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVIGYYDVYKGNLDNALLQGVQIP VNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLSTADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDVA TEYVEVLYKLFEGSWEEGAVIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGHA ECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYAKYASYDGALVLMSGWTGIDFG HYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWGGIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAHD SFADVIGYVVPELQKRGVYATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA
Specific function: Unknown
COG id: COG2141
COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ntaA/snaA/soxA(dszA) monooxygenase family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011251 - InterPro: IPR016048 - InterPro: IPR016215 [H]
Pfam domain/function: PF00296 Bac_luciferase [H]
EC number: NA
Molecular weight: Translated: 52216; Mature: 52085
Theoretical pI: Translated: 6.42; Mature: 6.42
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVI CCCEEEECEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH GYYDVYKGNLDNALLQGVQIPVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLS HHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH TADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDVATEYVEVLYKLFEGSWEEGA CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC VIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH EEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYA CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH KYASYDGALVLMSGWTGIDFGHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWG HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHC GIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAHDSFADVIGYVVPELQKRGVY CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE ATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA EEHHCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC >Mature Secondary Structure TKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVI CCEEEECEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH GYYDVYKGNLDNALLQGVQIPVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLS HHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH TADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDVATEYVEVLYKLFEGSWEEGA CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC VIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH EEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYA CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH KYASYDGALVLMSGWTGIDFGHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWG HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHC GIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAHDSFADVIGYVVPELQKRGVY CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE ATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA EEHHCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8867804; 9384377 [H]