Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

Click here to switch to the map view.

The map label for this gene is yxeK [H]

Identifier: 222102527

GI number: 222102527

Start: 122247

End: 123653

Strand: Direct

Name: yxeK [H]

Synonym: Avi_7155

Alternate gene names: 222102527

Gene position: 122247-123653 (Clockwise)

Preceding gene: 222102524

Following gene: 222102528

Centisome position: 19.35

GC content: 54.8

Gene sequence:

>1407_bases
ATGACAAAGACGATACGCTTCAATGCCTTTGAGATGAATTGCGTTGGCCACCAATCGCCGGGTCTATGGCGGCATCCGCG
CGATCGGTCCTGGCAATATAAGGATCTGGAATATTGGACGGATCTTGCCAAAATTCTGGAGACTGGCTTTTTTGAATCCA
TCTTCATCGCTGACGTTATCGGTTACTATGATGTCTATAAGGGTAATCTGGATAATGCGCTGCTTCAGGGCGTGCAGATA
CCCGTCAACGACCCGCTGCAATTGGCCAATCCCATTGCGCAGGCAACAAAGCATCTTGGCATTGGCATCACCGCTTCCAC
CAGTTTCGAGCATCCCTATACCTTTGCACGCAGGCTCTCTACGGCGGACCACCATACCAAAGGGCGTGTGGGCTGGAATA
TCGTCACGTCCTATCTGGAAAGCGGTGCCAAAAATGTTGGTCAGGGTGGCTTGCGCTCCCATGACAATCGCTATGATGTG
GCGACAGAGTATGTCGAGGTTCTCTACAAACTGTTCGAGGGCAGCTGGGAAGAAGGGGCGGTGATCCGCGATAAGGAGCG
CGGCATCTTTGCTGACCCTGCCAAAATTCACGAGATCGGCCATAAGGGCAAATATTTCGAGGTTCCGGGCTATCATTTGA
GTGAACCCTCGCCGCAGCGCACACCGGTGCTGTTTCAGGCGGGGGCCTCGGGTGCGGGCAAGCAATTTGCCGCAGGCCAC
GCCGAATGCGTGTTTATCTCAACGCCGTTGAAGGATGCCACTCGCGCTTATGTCGCGGATATTCGCAAGCGTGCAGCGGA
ACAGGGCCGTGATCCGAAGAAGGTGCTGATCTATGCCATGGCCACCATCATCGTTGATGAGACAGATGAAAAGGCGCGGG
CGAAATACGAAGACTATGCAAAATATGCCTCCTATGATGGTGCGCTGGTGTTGATGTCGGGCTGGACCGGGATTGATTTT
GGTCACTACCAGCCGTCTGACACCGTGAAAAAGGTCAAGACCAACGCGATTATCTCCGCTGTCGAGCATCTGTCCGAAGG
CAATAAAGTCTGGACCATAGAAGAATTGGCGAAGTGGGGCGGGATTGGCGGCCTTGGGCCGTTGTTTGTGGGATCACCCA
CCACGATTGCCGATCTGTTGCAGGAATGGGTCGAAGAAACCGATATCGATGGTTTCAACCTCGCCTATGCGCTGGCGCAC
GACAGTTTTGCCGATGTGATTGGCTATGTGGTGCCGGAGCTGCAAAAGCGCGGCGTTTATGCCACCCAGTACCGCGAGGG
GACTTTGCGCGAAAAACTGTTTGGCGAGGGGCCATACTTGCCACGAACCCACCCCGCCCATCAGTTCCGCGACATTGAGC
GCGTCAAGCGTGAGGAGGCAAACAAGGCTTCCGGCGAGGCTGCCTGA

Upstream 100 bases:

>100_bases
AATTATACCTCTATAAAATCTATAAAGATAATAGATTTTCTGTCTTGTCCGTCAGCCTGATCTTACGCTGCACCAGCATT
AGACACGGCTGGAAACTCTC

Downstream 100 bases:

>100_bases
TGACAGGTTAAGCCGCCCGCTCTACCGAAATATCTCTTGGCCAATATGCAAAACGCCACGCCGATCGAGCTGTGGCGAAG
GACTTTGTTTGTCCGCTTCA

Product: nitrilotriacetate monooxygenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 467

Protein sequence:

>468_residues
MTKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVIGYYDVYKGNLDNALLQGVQI
PVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLSTADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDV
ATEYVEVLYKLFEGSWEEGAVIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH
AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYAKYASYDGALVLMSGWTGIDF
GHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWGGIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAH
DSFADVIGYVVPELQKRGVYATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA

Sequences:

>Translated_468_residues
MTKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVIGYYDVYKGNLDNALLQGVQI
PVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLSTADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDV
ATEYVEVLYKLFEGSWEEGAVIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH
AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYAKYASYDGALVLMSGWTGIDF
GHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWGGIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAH
DSFADVIGYVVPELQKRGVYATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA
>Mature_467_residues
TKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVIGYYDVYKGNLDNALLQGVQIP
VNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLSTADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDVA
TEYVEVLYKLFEGSWEEGAVIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGHA
ECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYAKYASYDGALVLMSGWTGIDFG
HYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWGGIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAHD
SFADVIGYVVPELQKRGVYATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA

Specific function: Unknown

COG id: COG2141

COG function: function code C; Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ntaA/snaA/soxA(dszA) monooxygenase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011251
- InterPro:   IPR016048
- InterPro:   IPR016215 [H]

Pfam domain/function: PF00296 Bac_luciferase [H]

EC number: NA

Molecular weight: Translated: 52216; Mature: 52085

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVI
CCCEEEECEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
GYYDVYKGNLDNALLQGVQIPVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLS
HHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
TADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDVATEYVEVLYKLFEGSWEEGA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
VIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH
EEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYA
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KYASYDGALVLMSGWTGIDFGHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWG
HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHC
GIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAHDSFADVIGYVVPELQKRGVY
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE
ATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA
EEHHCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure 
TKTIRFNAFEMNCVGHQSPGLWRHPRDRSWQYKDLEYWTDLAKILETGFFESIFIADVI
CCEEEECEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHH
GYYDVYKGNLDNALLQGVQIPVNDPLQLANPIAQATKHLGIGITASTSFEHPYTFARRLS
HHHHHHCCCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHH
TADHHTKGRVGWNIVTSYLESGAKNVGQGGLRSHDNRYDVATEYVEVLYKLFEGSWEEGA
CCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC
VIRDKERGIFADPAKIHEIGHKGKYFEVPGYHLSEPSPQRTPVLFQAGASGAGKQFAAGH
EEEECCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCC
AECVFISTPLKDATRAYVADIRKRAAEQGRDPKKVLIYAMATIIVDETDEKARAKYEDYA
CEEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
KYASYDGALVLMSGWTGIDFGHYQPSDTVKKVKTNAIISAVEHLSEGNKVWTIEELAKWG
HHHCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHC
GIGGLGPLFVGSPTTIADLLQEWVEETDIDGFNLAYALAHDSFADVIGYVVPELQKRGVY
CCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHCCCE
ATQYREGTLREKLFGEGPYLPRTHPAHQFRDIERVKREEANKASGEAA
EEHHCCCHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8867804; 9384377 [H]