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The map label for this gene is 222102526

Identifier: 222102526

GI number: 222102526

Start: 121123

End: 121797

Strand: Reverse

Name: 222102526

Synonym: Avi_7154

Alternate gene names: NA

Gene position: 121797-121123 (Counterclockwise)

Preceding gene: 222102538

Following gene: 222102525

Centisome position: 19.28

GC content: 54.81

Gene sequence:

>675_bases
CTGAATGCCATTACCGAGAAGCTGAAACGCCAATCGAAAGACGATTTCAAGGGACGACATTTTGAGGCGTGGCTGATCGT
GCAGGCGGTTGCATGGTATTTGCGTTATCCGCTCAGCTATCGCGATTTGGAGGAAATGTTCCGGGAACGCAGTTTCGAGG
TTGACCATAGCACGATCAACCGCTGGGTTCTGGCCTACGCACCGATGATCGAGAAGCGGTTACGTCAGTTTCGTCGGCCA
CATTGCGGCTCGGTTCGCGTCGATGAGACCTACGTCAAGATCCGCGGCAAGTGGCGATACGTGTATCGCGCAATCGGCAA
GCACGGAAATCCCGTCGACTTCCTGCTGACGGCAAAGCGCGATCTTGATGCCGCCAATACGTTTCCGTCGGCGATCAAAA
CATCGGTCGATAGCGGGCTGTTGCATCCAGATCCTGTGCACTATGCCACCAAGCATCTCCAACAAGGCATCGAAAGCGAC
CACTTCCGGCTGAAGAAGAACATGCCGAAGATCGGCGGGTTTCAGTCATTCAACACTGCGCGGCGAACCATCGCGGGTTT
CGAGGCGATGCTGTGGTTGAGGAAAGGCTTCGGCTATTCCGGCGGCTGGACCGTCAACGACCAGAACGATCTGCTTGCGC
GCCTCTTCGGACTACAAAAGGTTAACAAAGTATAA

Upstream 100 bases:

>100_bases
TTATCTGATCGTGGGGCTTGTCGCAAATTTTTTCGGTTAACGGTATGTTGACCATCGGAAGAGAAATTCCGCTCCAATTG
TTGCGGAGCGTACCGATGGT

Downstream 100 bases:

>100_bases
ATGCACACCGTTTAGGGGATAATCCAGGCCCACGAAAATCTTTGCGACAAGCCCATTCGGCGGCTTTCCACGGCGCGCAA
ATCACTTGAACATCGCTGAC

Product: transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 224; Mature: 224

Protein sequence:

>224_residues
MNAITEKLKRQSKDDFKGRHFEAWLIVQAVAWYLRYPLSYRDLEEMFRERSFEVDHSTINRWVLAYAPMIEKRLRQFRRP
HCGSVRVDETYVKIRGKWRYVYRAIGKHGNPVDFLLTAKRDLDAANTFPSAIKTSVDSGLLHPDPVHYATKHLQQGIESD
HFRLKKNMPKIGGFQSFNTARRTIAGFEAMLWLRKGFGYSGGWTVNDQNDLLARLFGLQKVNKV

Sequences:

>Translated_224_residues
MNAITEKLKRQSKDDFKGRHFEAWLIVQAVAWYLRYPLSYRDLEEMFRERSFEVDHSTINRWVLAYAPMIEKRLRQFRRP
HCGSVRVDETYVKIRGKWRYVYRAIGKHGNPVDFLLTAKRDLDAANTFPSAIKTSVDSGLLHPDPVHYATKHLQQGIESD
HFRLKKNMPKIGGFQSFNTARRTIAGFEAMLWLRKGFGYSGGWTVNDQNDLLARLFGLQKVNKV
>Mature_224_residues
MNAITEKLKRQSKDDFKGRHFEAWLIVQAVAWYLRYPLSYRDLEEMFRERSFEVDHSTINRWVLAYAPMIEKRLRQFRRP
HCGSVRVDETYVKIRGKWRYVYRAIGKHGNPVDFLLTAKRDLDAANTFPSAIKTSVDSGLLHPDPVHYATKHLQQGIESD
HFRLKKNMPKIGGFQSFNTARRTIAGFEAMLWLRKGFGYSGGWTVNDQNDLLARLFGLQKVNKV

Specific function: Involved in the transposition of the insertion sequence [H]

COG id: COG3316

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 26193; Mature: 26193

Theoretical pI: Translated: 10.55; Mature: 10.55

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAITEKLKRQSKDDFKGRHFEAWLIVQAVAWYLRYPLSYRDLEEMFRERSFEVDHSTIN
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH
RWVLAYAPMIEKRLRQFRRPHCGSVRVDETYVKIRGKWRYVYRAIGKHGNPVDFLLTAKR
HHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECHHHHHHHHHCCCCCCEEEEEECCC
DLDAANTFPSAIKTSVDSGLLHPDPVHYATKHLQQGIESDHFRLKKNMPKIGGFQSFNTA
CCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHH
RRTIAGFEAMLWLRKGFGYSGGWTVNDQNDLLARLFGLQKVNKV
HHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAITEKLKRQSKDDFKGRHFEAWLIVQAVAWYLRYPLSYRDLEEMFRERSFEVDHSTIN
CCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCCHHHHH
RWVLAYAPMIEKRLRQFRRPHCGSVRVDETYVKIRGKWRYVYRAIGKHGNPVDFLLTAKR
HHHHHHHHHHHHHHHHHCCCCCCCEEECCEEEEEECHHHHHHHHHCCCCCCEEEEEECCC
DLDAANTFPSAIKTSVDSGLLHPDPVHYATKHLQQGIESDHFRLKKNMPKIGGFQSFNTA
CCCCHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCHHHHH
RRTIAGFEAMLWLRKGFGYSGGWTVNDQNDLLARLFGLQKVNKV
HHHHHHHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2548057; 2365064 [H]