Click here to switch to the map view.

The map label for this gene is 222102513

Identifier: 222102513

GI number: 222102513

Start: 108406

End: 109317

Strand: Reverse

Name: 222102513

Synonym: Avi_7134

Alternate gene names: NA

Gene position: 109317-108406 (Counterclockwise)

Preceding gene: 222102514

Following gene: 222102507

Centisome position: 17.3

GC content: 54.17

Gene sequence:

>912_bases
ATGGTGCATTATTTTCCCTCGAATGGAAGGAAGCACTATGGGCCAGGCTCTATACGGTCGCGCCACAACGATAGGTCAAG
CGGATTAGAAAACAGTCCAGTGGACTGTTTTCCCGCGCAGACGGTCCGTCGAGCAATACAAAATAGTCAAGAGAGCCTGA
GAGCGCTCTCAAAGCGGTATGGGATCAACCCGAAGACCGTTGCCAAGTGGAAGAAGCGCACATCGGTTGCCGATTTGGCG
ACCGGGCCGAAGGAACCGCATTCGACAGTCTTGATCCTCGAGGAGGAGGCCGTGATTGTCGCCTTCCGCAGGCACACGCT
TCTACCTTTGGATGATTGCCTTTATGCCCTTCAGCCAACAATCCCGCATCTGACGCGCTCGTCCTTACATCGATGCCTAC
AGCGCCATGACATTTCACGACTGCCGGAAGTCGAGGGCGACAAGGAGCCAAAAAAGAAGTTCAAGAGTTACCCCATTGGC
TACTTTCACATCGATATCGCTGAAGTCCAGACCGCTGAGGGCAAGCTCTATCTGTTTGTGGCCATTGATAGAACGTCCAA
GTTTGCCTTCGTCGAGCTTTACGCCAAAGCCGGAAAGATGAATGCAGCCCAATTCCTGCGCAATCTGGTCAAGGCTGTAC
CCTATGCCATCCATACGGTTCTGACGGACAACGGCATTCAGTTCACCAATCGGGCCTGCGATCTCTACGCCTTCCATCAC
ATCTTCGACCGGGTCTGTGACGAGAACGGCATTGAGCATCGTCTGACCAAGGTGAAGCCCCCCTTGGACCAATGGGCAGG
TCGAGCGACTGGAAAGCACGATCAAGGAAGCGACCGTCAAGCGTGTCCACTACAACGACGCCTACAATTTCGGGCGAAGG
CGCAAGACCCTAAAGAGCCTCACGCCCTATGA

Upstream 100 bases:

>100_bases
ATTGGGTAAGTATTTCAATGTAGCGCCACGGATGGAGCTGTGGGGTTTGGTGTGCCGCAGGTTCAGGCGAAAGTGGCTAG
TTGTTTGATCCCAGGCTTTA

Downstream 100 bases:

>100_bases
GTTCATCTGCAAACGGTGGACTTTGGAGCCGGAAGATTCATCATAAATCCAATCCAATCACATGCCGGGACTGAACATGC
AACACGTCCCAGCGTTTAGC

Product: Integrase catalytic core

Products: NA

Alternate protein names: Integrase Catalytic Region; Integrase Catalytic Subunit; Transcriptional Regulator; Integrase; Integrase Catalytic Domain-Containing Protein; Integrase Protein; Integrase Catalytic Core; Fis Family Transcriptional Regulator; ISKpn8 Transposase; LOW QUALITY PROTEIN Integrase Catalytic Subunit; Instegrase; Transposase Of

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MVHYFPSNGRKHYGPGSIRSRHNDRSSGLENSPVDCFPAQTVRRAIQNSQESLRALSKRYGINPKTVAKWKKRTSVADLA
TGPKEPHSTVLILEEEAVIVAFRRHTLLPLDDCLYALQPTIPHLTRSSLHRCLQRHDISRLPEVEGDKEPKKKFKSYPIG
YFHIDIAEVQTAEGKLYLFVAIDRTSKFAFVELYAKAGKMNAAQFLRNLVKAVPYAIHTVLTDNGIQFTNRACDLYAFHH
IFDRVCDENGIEHRLTKVKPPLDQWAGRATGKHDQGSDRQACPLQRRLQFRAKAQDPKEPHAL

Sequences:

>Translated_303_residues
MVHYFPSNGRKHYGPGSIRSRHNDRSSGLENSPVDCFPAQTVRRAIQNSQESLRALSKRYGINPKTVAKWKKRTSVADLA
TGPKEPHSTVLILEEEAVIVAFRRHTLLPLDDCLYALQPTIPHLTRSSLHRCLQRHDISRLPEVEGDKEPKKKFKSYPIG
YFHIDIAEVQTAEGKLYLFVAIDRTSKFAFVELYAKAGKMNAAQFLRNLVKAVPYAIHTVLTDNGIQFTNRACDLYAFHH
IFDRVCDENGIEHRLTKVKPPLDQWAGRATGKHDQGSDRQACPLQRRLQFRAKAQDPKEPHAL
>Mature_303_residues
MVHYFPSNGRKHYGPGSIRSRHNDRSSGLENSPVDCFPAQTVRRAIQNSQESLRALSKRYGINPKTVAKWKKRTSVADLA
TGPKEPHSTVLILEEEAVIVAFRRHTLLPLDDCLYALQPTIPHLTRSSLHRCLQRHDISRLPEVEGDKEPKKKFKSYPIG
YFHIDIAEVQTAEGKLYLFVAIDRTSKFAFVELYAKAGKMNAAQFLRNLVKAVPYAIHTVLTDNGIQFTNRACDLYAFHH
IFDRVCDENGIEHRLTKVKPPLDQWAGRATGKHDQGSDRQACPLQRRLQFRAKAQDPKEPHAL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34482; Mature: 34482

Theoretical pI: Translated: 10.06; Mature: 10.06

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVHYFPSNGRKHYGPGSIRSRHNDRSSGLENSPVDCFPAQTVRRAIQNSQESLRALSKRY
CEEEECCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
GINPKTVAKWKKRTSVADLATGPKEPHSTVLILEEEAVIVAFRRHTLLPLDDCLYALQPT
CCCHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCC
IPHLTRSSLHRCLQRHDISRLPEVEGDKEPKKKFKSYPIGYFHIDIAEVQTAEGKLYLFV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEEHHHEEECCCCEEEEE
AIDRTSKFAFVELYAKAGKMNAAQFLRNLVKAVPYAIHTVLTDNGIQFTNRACDLYAFHH
EECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHH
IFDRVCDENGIEHRLTKVKPPLDQWAGRATGKHDQGSDRQACPLQRRLQFRAKAQDPKEP
HHHHHHCCCCHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
HAL
CCC
>Mature Secondary Structure
MVHYFPSNGRKHYGPGSIRSRHNDRSSGLENSPVDCFPAQTVRRAIQNSQESLRALSKRY
CEEEECCCCCCCCCCCCHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHCHHHHHHHHHHHH
GINPKTVAKWKKRTSVADLATGPKEPHSTVLILEEEAVIVAFRRHTLLPLDDCLYALQPT
CCCHHHHHHHHHHCCHHHHHCCCCCCCCEEEEEECCEEEEEECCCCCCCHHHHHHHHCCC
IPHLTRSSLHRCLQRHDISRLPEVEGDKEPKKKFKSYPIGYFHIDIAEVQTAEGKLYLFV
CHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCEEEEEEHHHEEECCCCEEEEE
AIDRTSKFAFVELYAKAGKMNAAQFLRNLVKAVPYAIHTVLTDNGIQFTNRACDLYAFHH
EECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCHHHHHHHHHH
IFDRVCDENGIEHRLTKVKPPLDQWAGRATGKHDQGSDRQACPLQRRLQFRAKAQDPKEP
HHHHHHCCCCHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCC
HAL
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA