| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102493
Identifier: 222102493
GI number: 222102493
Start: 88930
End: 90174
Strand: Direct
Name: 222102493
Synonym: Avi_7106
Alternate gene names: NA
Gene position: 88930-90174 (Clockwise)
Preceding gene: 222102488
Following gene: 222102494
Centisome position: 14.08
GC content: 54.14
Gene sequence:
>1245_bases ATGAATTTCGAAGCCAGAAGTTCAAAGCATTTCGACCGCGTGTCTCCTAAAGGTTGCTTTGGGCAGCAAAAGCAAGACGC AGGCCCCTTCGCGTTTGGGACGAAAAGTGAAACACTATTTAAAATCAATAAAATATCAAAGAATTTTACGATTCTACCGA TAGCGGTCGTGCAATATTCGGACTGGCAGGAAGATAGGGATCGCACGGCACGCAAGGTTTGGTCAGACCTGGAGATGGCA CAGACATTAATTGTGCGCTCAAGCTGCGCCGTCGAAGATTCCGAAGTCGCCTCGCACGCCGGGGAATTCCTTTCTCTTCT CAACATCAAAAGCCTGGCGGATTTGGATCGCGCCATTGATGACGTATTCATGTCCTATGGCAAACCAACACCGGGTGAGC AGGTGCTTGTTCAACCCATGGCGCGTGAGGTTGTCTTGAGCGGCGTCGCCATGACTGCGGACGCCCAAAGTGGTGCGCCC TACACGATCGTCGACTATGCCCACGGAGCCGACACCGAAGCCGTTACGGCCGGAACATCAAACTCGGGCATGGCGATCTG CGTGACGGGCTACGAAAGCCATCTGCCGCCTTGCTTGCAACCTTTGGCACCCGCTCTTCGCGAACTGGCTGAGATCACGG GCGGCAAGCCTGTCGATATCGAATTCGCGATTACCGCGACAGGGACCGTCATCATCTTCCAGGTGCGCCCAATCGTGATG AAATCACCAAGGCATAAGGTTGTCGGCTTTGGTTTCCCATATCTGATCGAGAACGTGCGACGTTGCTATAAAGATATCGT CAAATTCAATGCGCGCAACGGGCTAGCGAATGCCCTGTTTGGTGTTATGCCGGATTGGAATCCAGCAGAGTTAATCGGCA TCAAGCCGCGTCCCCTGACGTACTCTCTGTATCGATATCTGATTACAGATGTGGCCTGGACCAAGGGGCGTGCGCCGCTT GGGTACACCGACATGAGCGGCGACGGGCTGATGCGCCTCATCGGCGGAACACCCTTCATTAATGTGAGTGCTAGCCTTAG TTCATTTGTGCCCAAATCGGTACCTGCGCTCATACGTAGCAACATCGTTGCAGATGCGTCTCGCGCGCTGGCAGCAGCAC CGCAATTTCACGACAAGATTGAATTCGAGATCATGCCAACGGTGTTCACGCCGGACTTGACGCAGCCCCACTGGAGGGCT CGCTTTCCGACGCGGAGTGGGCTGGGTATTTGGAAGATCTCCTGA
Upstream 100 bases:
>100_bases TCCACCTTTTGGCTATTTTTTTATGTTTACAACTTGCAGGATGATTCGATCCATATTATGTGACATTTTTATGACAAAGC ATTTATTTAGAGTTGCATAG
Downstream 100 bases:
>100_bases AACTCACTAACGGCGTCGTGGCCGAAGGCGGTGCCTATGACAGCATCATGGCCGACGTGGTGCGTCTGGAAGCGATGTAT GAGCAAAAGAGCGATCTTAA
Product: phosphoenolpyruvate synthase-related protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 414; Mature: 414
Protein sequence:
>414_residues MNFEARSSKHFDRVSPKGCFGQQKQDAGPFAFGTKSETLFKINKISKNFTILPIAVVQYSDWQEDRDRTARKVWSDLEMA QTLIVRSSCAVEDSEVASHAGEFLSLLNIKSLADLDRAIDDVFMSYGKPTPGEQVLVQPMAREVVLSGVAMTADAQSGAP YTIVDYAHGADTEAVTAGTSNSGMAICVTGYESHLPPCLQPLAPALRELAEITGGKPVDIEFAITATGTVIIFQVRPIVM KSPRHKVVGFGFPYLIENVRRCYKDIVKFNARNGLANALFGVMPDWNPAELIGIKPRPLTYSLYRYLITDVAWTKGRAPL GYTDMSGDGLMRLIGGTPFINVSASLSSFVPKSVPALIRSNIVADASRALAAAPQFHDKIEFEIMPTVFTPDLTQPHWRA RFPTRSGLGIWKIS
Sequences:
>Translated_414_residues MNFEARSSKHFDRVSPKGCFGQQKQDAGPFAFGTKSETLFKINKISKNFTILPIAVVQYSDWQEDRDRTARKVWSDLEMA QTLIVRSSCAVEDSEVASHAGEFLSLLNIKSLADLDRAIDDVFMSYGKPTPGEQVLVQPMAREVVLSGVAMTADAQSGAP YTIVDYAHGADTEAVTAGTSNSGMAICVTGYESHLPPCLQPLAPALRELAEITGGKPVDIEFAITATGTVIIFQVRPIVM KSPRHKVVGFGFPYLIENVRRCYKDIVKFNARNGLANALFGVMPDWNPAELIGIKPRPLTYSLYRYLITDVAWTKGRAPL GYTDMSGDGLMRLIGGTPFINVSASLSSFVPKSVPALIRSNIVADASRALAAAPQFHDKIEFEIMPTVFTPDLTQPHWRA RFPTRSGLGIWKIS >Mature_414_residues MNFEARSSKHFDRVSPKGCFGQQKQDAGPFAFGTKSETLFKINKISKNFTILPIAVVQYSDWQEDRDRTARKVWSDLEMA QTLIVRSSCAVEDSEVASHAGEFLSLLNIKSLADLDRAIDDVFMSYGKPTPGEQVLVQPMAREVVLSGVAMTADAQSGAP YTIVDYAHGADTEAVTAGTSNSGMAICVTGYESHLPPCLQPLAPALRELAEITGGKPVDIEFAITATGTVIIFQVRPIVM KSPRHKVVGFGFPYLIENVRRCYKDIVKFNARNGLANALFGVMPDWNPAELIGIKPRPLTYSLYRYLITDVAWTKGRAPL GYTDMSGDGLMRLIGGTPFINVSASLSSFVPKSVPALIRSNIVADASRALAAAPQFHDKIEFEIMPTVFTPDLTQPHWRA RFPTRSGLGIWKIS
Specific function: Unknown
COG id: COG0574
COG function: function code G; Phosphoenolpyruvate synthase/pyruvate phosphate dikinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45367; Mature: 45367
Theoretical pI: Translated: 8.20; Mature: 8.20
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNFEARSSKHFDRVSPKGCFGQQKQDAGPFAFGTKSETLFKINKISKNFTILPIAVVQYS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCEEEEEEEEEECC DWQEDRDRTARKVWSDLEMAQTLIVRSSCAVEDSEVASHAGEFLSLLNIKSLADLDRAID CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DVFMSYGKPTPGEQVLVQPMAREVVLSGVAMTADAQSGAPYTIVDYAHGADTEAVTAGTS HHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEECCCCCCCEEECCCC NSGMAICVTGYESHLPPCLQPLAPALRELAEITGGKPVDIEFAITATGTVIIFQVRPIVM CCCCEEEEECCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECHHHH KSPRHKVVGFGFPYLIENVRRCYKDIVKFNARNGLANALFGVMPDWNPAELIGIKPRPLT CCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHEEECCCCCCH YSLYRYLITDVAWTKGRAPLGYTDMSGDGLMRLIGGTPFINVSASLSSFVPKSVPALIRS HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEECCHHHHHCCHHHHHHHHH NIVADASRALAAAPQFHDKIEFEIMPTVFTPDLTQPHWRARFPTRSGLGIWKIS HHHHHHHHHHHCCCCHHCCEEEEEECEEECCCCCCCCCEECCCCCCCCEEEEEC >Mature Secondary Structure MNFEARSSKHFDRVSPKGCFGQQKQDAGPFAFGTKSETLFKINKISKNFTILPIAVVQYS CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCEEEEEEECCCCEEEEEEEEEECC DWQEDRDRTARKVWSDLEMAQTLIVRSSCAVEDSEVASHAGEFLSLLNIKSLADLDRAID CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH DVFMSYGKPTPGEQVLVQPMAREVVLSGVAMTADAQSGAPYTIVDYAHGADTEAVTAGTS HHHHHCCCCCCCHHHHHHHHHHHHHHHCCEEECCCCCCCCEEEEEECCCCCCCEEECCCC NSGMAICVTGYESHLPPCLQPLAPALRELAEITGGKPVDIEFAITATGTVIIFQVRPIVM CCCCEEEEECCHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCEEEEEEECHHHH KSPRHKVVGFGFPYLIENVRRCYKDIVKFNARNGLANALFGVMPDWNPAELIGIKPRPLT CCCCCCEEECCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHEEECCCCCCH YSLYRYLITDVAWTKGRAPLGYTDMSGDGLMRLIGGTPFINVSASLSSFVPKSVPALIRS HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEECCCCEEEECCHHHHHCCHHHHHHHHH NIVADASRALAAAPQFHDKIEFEIMPTVFTPDLTQPHWRARFPTRSGLGIWKIS HHHHHHHHHHHCCCCHHCCEEEEEECEEECCCCCCCCCEECCCCCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA