Definition Agrobacterium vitis S4 plasmid pAtS4e, complete sequence.
Accession NC_011981
Length 631,775

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The map label for this gene is 222102488

Identifier: 222102488

GI number: 222102488

Start: 84694

End: 85212

Strand: Direct

Name: 222102488

Synonym: Avi_7096

Alternate gene names: NA

Gene position: 84694-85212 (Clockwise)

Preceding gene: 222102487

Following gene: 222102493

Centisome position: 13.41

GC content: 58.0

Gene sequence:

>519_bases
ATGATCACCCGGGCTCCAATCTCTGCAACCAAAAGGCCGATCCCTATGGACACTTCTTTTGCTTTCGATCAGCTGCGTCT
TTTGCCGGTCTGGGAGGCCAGCGTGCTTCTTGAACCCACGCAGGTGCGCGGCCCCGGACCTCTGGGAGTCCGCAATATCG
TGCCCATTGTCGGCGGAGATTTTGAGGGCGTGATCGCGCCAGAGACAGACAGCCCCCGCCGCTTCTGCGGCACCATTCAG
CCCGGTGGTTTTGATTTACAGCGAGAGCGGGCCGACGGCATGCTGGAGCTGGAAGCGATTTACCACATGCTGACGGACGA
CCATGTTTCCATCGAAATTCGCAATTATGCGCTGCTGGAACCGAAGCTGGACGGGTCTATCGGCTATTCACGCTGCCGCA
TCTTCGTCGATGCCCCCGATGGGGATTATGCATGGCTCAATCGGCGAATCTTTACCGGCTCTGTCGAAGTCATCCGCCCC
CAAAAGCAGGTCTTGATCCGATCCTTCACGGTCGTCTAG

Upstream 100 bases:

>100_bases
ATTGAACTTTCTCGCCGCTGTCAAATTGGCAGCAGCAAGAATTTGGATCAGATCGTTATGAGTCTACGGCCTAAAAGATG
CTGGCGATGATCCACAACGA

Downstream 100 bases:

>100_bases
CGATTCCAGCGGCGTACGCTCTCCTTCAGGCTGCGAAAATGGCCAACGCGGAGAACGCCCCCTGAATGCGGCTTGGGTAA
GCGGGTAACGCAAGTACCAG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 172; Mature: 172

Protein sequence:

>172_residues
MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGDFEGVIAPETDSPRRFCGTIQ
PGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLEPKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRP
QKQVLIRSFTVV

Sequences:

>Translated_172_residues
MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGDFEGVIAPETDSPRRFCGTIQ
PGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLEPKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRP
QKQVLIRSFTVV
>Mature_172_residues
MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGDFEGVIAPETDSPRRFCGTIQ
PGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLEPKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRP
QKQVLIRSFTVV

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19238; Mature: 19238

Theoretical pI: Translated: 5.28; Mature: 5.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGD
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCHHCCCCCCCCCCEEEEEECCC
FEGVIAPETDSPRRFCGTIQPGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLE
CCCEEECCCCCCHHEEECCCCCCCCEEHHHCCCEEEHHHHHHHHCCCEEEEEECCEEEEC
PKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRPQKQVLIRSFTVV
CCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEECCHHHHHEEHEECC
>Mature Secondary Structure
MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGD
CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCHHCCCCCCCCCCEEEEEECCC
FEGVIAPETDSPRRFCGTIQPGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLE
CCCEEECCCCCCHHEEECCCCCCCCEEHHHCCCEEEHHHHHHHHCCCEEEEEECCEEEEC
PKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRPQKQVLIRSFTVV
CCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEECCHHHHHEEHEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA