| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102488
Identifier: 222102488
GI number: 222102488
Start: 84694
End: 85212
Strand: Direct
Name: 222102488
Synonym: Avi_7096
Alternate gene names: NA
Gene position: 84694-85212 (Clockwise)
Preceding gene: 222102487
Following gene: 222102493
Centisome position: 13.41
GC content: 58.0
Gene sequence:
>519_bases ATGATCACCCGGGCTCCAATCTCTGCAACCAAAAGGCCGATCCCTATGGACACTTCTTTTGCTTTCGATCAGCTGCGTCT TTTGCCGGTCTGGGAGGCCAGCGTGCTTCTTGAACCCACGCAGGTGCGCGGCCCCGGACCTCTGGGAGTCCGCAATATCG TGCCCATTGTCGGCGGAGATTTTGAGGGCGTGATCGCGCCAGAGACAGACAGCCCCCGCCGCTTCTGCGGCACCATTCAG CCCGGTGGTTTTGATTTACAGCGAGAGCGGGCCGACGGCATGCTGGAGCTGGAAGCGATTTACCACATGCTGACGGACGA CCATGTTTCCATCGAAATTCGCAATTATGCGCTGCTGGAACCGAAGCTGGACGGGTCTATCGGCTATTCACGCTGCCGCA TCTTCGTCGATGCCCCCGATGGGGATTATGCATGGCTCAATCGGCGAATCTTTACCGGCTCTGTCGAAGTCATCCGCCCC CAAAAGCAGGTCTTGATCCGATCCTTCACGGTCGTCTAG
Upstream 100 bases:
>100_bases ATTGAACTTTCTCGCCGCTGTCAAATTGGCAGCAGCAAGAATTTGGATCAGATCGTTATGAGTCTACGGCCTAAAAGATG CTGGCGATGATCCACAACGA
Downstream 100 bases:
>100_bases CGATTCCAGCGGCGTACGCTCTCCTTCAGGCTGCGAAAATGGCCAACGCGGAGAACGCCCCCTGAATGCGGCTTGGGTAA GCGGGTAACGCAAGTACCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 172; Mature: 172
Protein sequence:
>172_residues MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGDFEGVIAPETDSPRRFCGTIQ PGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLEPKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRP QKQVLIRSFTVV
Sequences:
>Translated_172_residues MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGDFEGVIAPETDSPRRFCGTIQ PGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLEPKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRP QKQVLIRSFTVV >Mature_172_residues MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGDFEGVIAPETDSPRRFCGTIQ PGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLEPKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRP QKQVLIRSFTVV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 19238; Mature: 19238
Theoretical pI: Translated: 5.28; Mature: 5.28
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGD CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCHHCCCCCCCCCCEEEEEECCC FEGVIAPETDSPRRFCGTIQPGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLE CCCEEECCCCCCHHEEECCCCCCCCEEHHHCCCEEEHHHHHHHHCCCEEEEEECCEEEEC PKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRPQKQVLIRSFTVV CCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEECCHHHHHEEHEECC >Mature Secondary Structure MITRAPISATKRPIPMDTSFAFDQLRLLPVWEASVLLEPTQVRGPGPLGVRNIVPIVGGD CCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEECCHHCCCCCCCCCCEEEEEECCC FEGVIAPETDSPRRFCGTIQPGGFDLQRERADGMLELEAIYHMLTDDHVSIEIRNYALLE CCCEEECCCCCCHHEEECCCCCCCCEEHHHCCCEEEHHHHHHHHCCCEEEEEECCEEEEC PKLDGSIGYSRCRIFVDAPDGDYAWLNRRIFTGSVEVIRPQKQVLIRSFTVV CCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCEEEECCHHHHHEEHEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA