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The map label for this gene is traC [H]

Identifier: 222102460

GI number: 222102460

Start: 55522

End: 55818

Strand: Reverse

Name: traC [H]

Synonym: Avi_7063

Alternate gene names: 222102460

Gene position: 55818-55522 (Counterclockwise)

Preceding gene: 222102468

Following gene: 222102459

Centisome position: 8.84

GC content: 60.27

Gene sequence:

>297_bases
ATGAAGAAGCCGTCATCGAAGATCAGGGAAGAAATCGCCAAATTACAGGACCAACTGAGAGCGGCTGAAACACGCGAGGC
CGAACGCATCGGCCGGATCGCACTGAAGGCCGGGATTGGGGAGATCGAGATTGACGAGGCAGAGCTTCAGGCGGCTTTCG
AGGAGATTGCACGACGGTTTCGCGGAGGCAAAGGACCTGCGACCGGAAAAGAGAATGGGCATGGTGACAAGCCAGATCGC
GACACCCGCCCGTCGTTCACGCCTGGCGCGGATGCGGGCGGGCCTGGTGAGGCTTGA

Upstream 100 bases:

>100_bases
CCCTTGGCGATCTGCAGATCTGCAGATTCCATTTTTCGAGCATCCGGGGGAGACTTGGCGTCGCAAATGCAACGCCACGA
CGCCAAGGAGAGCAACCGGA

Downstream 100 bases:

>100_bases
TCGGATGGCGAAGGCGATGACGACAGAAGCGCGCAAAAAGGACACGCGCGAAAAGATCGAGCTCGGTGCCCTGATCGTCA
AAGCGGGCTTGCGCTATGAG

Product: conjugal transfer protein Dtr system

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 98; Mature: 98

Protein sequence:

>98_residues
MKKPSSKIREEIAKLQDQLRAAETREAERIGRIALKAGIGEIEIDEAELQAAFEEIARRFRGGKGPATGKENGHGDKPDR
DTRPSFTPGADAGGPGEA

Sequences:

>Translated_98_residues
MKKPSSKIREEIAKLQDQLRAAETREAERIGRIALKAGIGEIEIDEAELQAAFEEIARRFRGGKGPATGKENGHGDKPDR
DTRPSFTPGADAGGPGEA
>Mature_98_residues
MKKPSSKIREEIAKLQDQLRAAETREAERIGRIALKAGIGEIEIDEAELQAAFEEIARRFRGGKGPATGKENGHGDKPDR
DTRPSFTPGADAGGPGEA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012930 [H]

Pfam domain/function: PF07820 TraC [H]

EC number: NA

Molecular weight: Translated: 10526; Mature: 10526

Theoretical pI: Translated: 5.96; Mature: 5.96

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKPSSKIREEIAKLQDQLRAAETREAERIGRIALKAGIGEIEIDEAELQAAFEEIARRF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
RGGKGPATGKENGHGDKPDRDTRPSFTPGADAGGPGEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKKPSSKIREEIAKLQDQLRAAETREAERIGRIALKAGIGEIEIDEAELQAAFEEIARRF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHH
RGGKGPATGKENGHGDKPDRDTRPSFTPGADAGGPGEA
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763953; 11743193; 11743194 [H]