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The map label for this gene is traD [H]

Identifier: 222102459

GI number: 222102459

Start: 55302

End: 55547

Strand: Reverse

Name: traD [H]

Synonym: Avi_7062

Alternate gene names: 222102459

Gene position: 55547-55302 (Counterclockwise)

Preceding gene: 222102460

Following gene: 222102458

Centisome position: 8.79

GC content: 59.76

Gene sequence:

>246_bases
ATGCGGGCGGGCCTGGTGAGGCTTGATCGGATGGCGAAGGCGATGACGACAGAAGCGCGCAAAAAGGACACGCGCGAAAA
GATCGAGCTCGGTGCCCTGATCGTCAAAGCGGGCTTGCGCTATGAGAAGCGGGCGCTGCTGCTCGGTCTTCTGATCGATG
CGAACAAAAGGATCAAAGGCAATGAGGCGGAGCGATCGCGCCTGACGTCCATCGGCGTGGAGGCTTTTGGCCATGACGGT
GAATAG

Upstream 100 bases:

>100_bases
CGACGGTTTCGCGGAGGCAAAGGACCTGCGACCGGAAAAGAGAATGGGCATGGTGACAAGCCAGATCGCGACACCCGCCC
GTCGTTCACGCCTGGCGCGG

Downstream 100 bases:

>100_bases
GCTTTTGCTGTTCGTTCTGCTGGCGGCAATCATGCTTGCCGCGTTGGTAATGACATCCGGAATGGAACATCGGCTGGCGG
AGTTCGGCTCCTCGACCCAG

Product: conjugal transfer protein TraD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 81; Mature: 81

Protein sequence:

>81_residues
MRAGLVRLDRMAKAMTTEARKKDTREKIELGALIVKAGLRYEKRALLLGLLIDANKRIKGNEAERSRLTSIGVEAFGHDG
E

Sequences:

>Translated_81_residues
MRAGLVRLDRMAKAMTTEARKKDTREKIELGALIVKAGLRYEKRALLLGLLIDANKRIKGNEAERSRLTSIGVEAFGHDG
E
>Mature_81_residues
MRAGLVRLDRMAKAMTTEARKKDTREKIELGALIVKAGLRYEKRALLLGLLIDANKRIKGNEAERSRLTSIGVEAFGHDG
E

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the traD family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009444 [H]

Pfam domain/function: PF06412 TraD [H]

EC number: NA

Molecular weight: Translated: 9022; Mature: 9022

Theoretical pI: Translated: 10.80; Mature: 10.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAGLVRLDRMAKAMTTEARKKDTREKIELGALIVKAGLRYEKRALLLGLLIDANKRIKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
NEAERSRLTSIGVEAFGHDGE
CHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MRAGLVRLDRMAKAMTTEARKKDTREKIELGALIVKAGLRYEKRALLLGLLIDANKRIKG
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCC
NEAERSRLTSIGVEAFGHDGE
CHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8763954 [H]