| Definition | Agrobacterium vitis S4 plasmid pAtS4e, complete sequence. |
|---|---|
| Accession | NC_011981 |
| Length | 631,775 |
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The map label for this gene is 222102449
Identifier: 222102449
GI number: 222102449
Start: 43932
End: 44465
Strand: Reverse
Name: 222102449
Synonym: Avi_7050
Alternate gene names: NA
Gene position: 44465-43932 (Counterclockwise)
Preceding gene: 222102450
Following gene: 222102448
Centisome position: 7.04
GC content: 55.62
Gene sequence:
>534_bases ATGTATGCGATTCACCGACTGGACATCGACAAGCACAGACAAGATGCCTGGATGGTCAATCTTTCTCGCGGCGGGAAATC GATCCACATGACCTTCAGCGACAGCACCTATGGTGGGAAGGATCAGGCGCTGGAAGTGGCGCAAGCCTACCGCGATGCCG TTCTCCGGGTCGTACCCCCATTGAGCAACAATGATATGCGCATGTTGGTGCGCAAAAATCGCTCAGAAGGCAGCAGCGTG CCGGGCGTCTATTATATCGGACCCACCGGGGCGCATAAAACCGGTATCTGGATGGCTCGTATTGAGATCGCCCTTGATGA TAACACGCCGGTCCCTGCGGGAAAGCGCCGCCGCCGACAGTTTACGCGCACCTTCAACGTCAGCAAATTCGGCTATGAGG AAGCCCGCCGTATGGCGGAAGAAGAACGCATTCGCATGGTCATGGCTGTCGAAAATGGCGAAGATCCGGCTTTACGCAGC CCGCAAGCTTTGAAACTTCATGAGAAGCTTACCCGAGACGACAACGACGATTAG
Upstream 100 bases:
>100_bases GCCTGAGGCTGATTGGTCGAATGCGCGAAATCGGACGGCAATAACAATGATCAGACCACGACCTAAACTTGCTCCAGAGG AGCGCTTCCATGACGAAGCT
Downstream 100 bases:
>100_bases AGAAGGCGTTGTCTTCAGCACCACCAGAAAAACGGCCGCTTTTCTGGTGGTCGTGAATAGACCGATATTGGTGTGAGAAA ATCACAAGAAAACCCGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 177
Protein sequence:
>177_residues MYAIHRLDIDKHRQDAWMVNLSRGGKSIHMTFSDSTYGGKDQALEVAQAYRDAVLRVVPPLSNNDMRMLVRKNRSEGSSV PGVYYIGPTGAHKTGIWMARIEIALDDNTPVPAGKRRRRQFTRTFNVSKFGYEEARRMAEEERIRMVMAVENGEDPALRS PQALKLHEKLTRDDNDD
Sequences:
>Translated_177_residues MYAIHRLDIDKHRQDAWMVNLSRGGKSIHMTFSDSTYGGKDQALEVAQAYRDAVLRVVPPLSNNDMRMLVRKNRSEGSSV PGVYYIGPTGAHKTGIWMARIEIALDDNTPVPAGKRRRRQFTRTFNVSKFGYEEARRMAEEERIRMVMAVENGEDPALRS PQALKLHEKLTRDDNDD >Mature_177_residues MYAIHRLDIDKHRQDAWMVNLSRGGKSIHMTFSDSTYGGKDQALEVAQAYRDAVLRVVPPLSNNDMRMLVRKNRSEGSSV PGVYYIGPTGAHKTGIWMARIEIALDDNTPVPAGKRRRRQFTRTFNVSKFGYEEARRMAEEERIRMVMAVENGEDPALRS PQALKLHEKLTRDDNDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20234; Mature: 20234
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 5.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 5.1 %Met (Mature Protein) 5.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MYAIHRLDIDKHRQDAWMVNLSRGGKSIHMTFSDSTYGGKDQALEVAQAYRDAVLRVVPP CCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEECC LSNNDMRMLVRKNRSEGSSVPGVYYIGPTGAHKTGIWMARIEIALDDNTPVPAGKRRRRQ CCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHH FTRTFNVSKFGYEEARRMAEEERIRMVMAVENGEDPALRSPQALKLHEKLTRDDNDD HHHHCCCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCC >Mature Secondary Structure MYAIHRLDIDKHRQDAWMVNLSRGGKSIHMTFSDSTYGGKDQALEVAQAYRDAVLRVVPP CCEEEECCCCCCCCCEEEEEECCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHEEEECC LSNNDMRMLVRKNRSEGSSVPGVYYIGPTGAHKTGIWMARIEIALDDNTPVPAGKRRRRQ CCCCCEEEEEECCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCHHHHHH FTRTFNVSKFGYEEARRMAEEERIRMVMAVENGEDPALRSPQALKLHEKLTRDDNDD HHHHCCCCCCCHHHHHHHHHHHHEEEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA