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The map label for this gene is yocS [H]

Identifier: 222096970

GI number: 222096970

Start: 3252711

End: 3253679

Strand: Reverse

Name: yocS [H]

Synonym: BCQ_3310

Alternate gene names: 222096970

Gene position: 3253679-3252711 (Counterclockwise)

Preceding gene: 222096971

Following gene: 222096969

Centisome position: 62.4

GC content: 37.05

Gene sequence:

>969_bases
GTGAAAGTACTAGAAGCGATAAGTAATATAGCTGGAAAGTATTTTGCGTTTTGGGTTATTTGTATTGCAACTATTGCGTA
TTTTATTCCCGCTCCATTTCTCGGGTTAAATAGTTACATAACGATTTTACTCGGGGTTGTTATGTTTGGGATGGGGTTAA
CATTAAAGGCTGTTGATTTTAAAATTATTGCTACAAAACCATTGCCAGTTATTATCGGTGTATGTGCTCAGTTTATTATT
ATGCCACTTGTCGCATACGTACTAGCCTACGTTATGAATCTGCCAGCAGAATTAGCAGCTGGATTAGTATTACTCGGTTC
AGTACCGGGTGGCACCGCATCAAATGTTATGGTTTATTTAGCAAAAGGAAACTTAGCGTTGTCTATTGCAATGACATCAT
TATCAACGTTACTAGCACCAATTGCTACACCTCTTATTTTACTATTACTTGCAGGACAATGGATGCCGGTTAATCCTATG
TCTATGTTTCTTTCTATCGTACAAGTTATTATCATACCTATTATTTTAGGATTAGTAGTGAAGAAGTTATTCCCTAAAAC
TGTTACGAAAGGAATGACCGTTATCCCTTTCATATCGGTTGTAGCAATTATCATTATCGTTTCTGCAGTTGTTTCAGCGA
ATGTAAGTAGCATTACTTCTTCAGGCCTTCTTATCTTTATTGCCGTTATGCTTCATAATGCTTTCGGTTTTTTACTCGGA
TATATAACAGCATTCATACTTAGACTAGACGAAGGGACAAGAAGAGCTATTTCAATAAAAGTAGGAATGCAAAATTCAGG
TTTAGGTGTTGCGCTAACAACAGCACATTTTGGACCAGCTGCCGCCCTCCCAAGTGTATTAGCAGCAGTATGGCATAACA
TTGCAGGACCGATTTTAGCAACCATCTGGTCAAAAAATGCAAAGGATACTTTCAGTGATGAAACTTTATCGGTAAATATA
GAAAAATAG

Upstream 100 bases:

>100_bases
GCGGCATTACTCGTAATGGAAAAAATAAAGAAAGCTCTTGATCCGCAAAATATTTTGAATCCGAATAAAGTTTTTCAGTT
AAAGGATAGGAGCTGATCGG

Downstream 100 bases:

>100_bases
GAATGATAAAGAATGCAAAAACGTATTGTACATTTTGAAGGGCTAGTTGTTTTCATAGCTGTGATTTATGCGTATTCATT
ATATGAATTTAGTTGGATAA

Product: bile acid transporter family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 322; Mature: 322

Protein sequence:

>322_residues
MKVLEAISNIAGKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFII
MPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMVYLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPM
SMFLSIVQVIIIPIILGLVVKKLFPKTVTKGMTVIPFISVVAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
YITAFILRLDEGTRRAISIKVGMQNSGLGVALTTAHFGPAAALPSVLAAVWHNIAGPILATIWSKNAKDTFSDETLSVNI
EK

Sequences:

>Translated_322_residues
MKVLEAISNIAGKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFII
MPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMVYLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPM
SMFLSIVQVIIIPIILGLVVKKLFPKTVTKGMTVIPFISVVAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
YITAFILRLDEGTRRAISIKVGMQNSGLGVALTTAHFGPAAALPSVLAAVWHNIAGPILATIWSKNAKDTFSDETLSVNI
EK
>Mature_322_residues
MKVLEAISNIAGKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFII
MPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMVYLAKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPM
SMFLSIVQVIIIPIILGLVVKKLFPKTVTKGMTVIPFISVVAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
YITAFILRLDEGTRRAISIKVGMQNSGLGVALTTAHFGPAAALPSVLAAVWHNIAGPILATIWSKNAKDTFSDETLSVNI
EK

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=254, Percent_Identity=29.1338582677165, Blast_Score=99, Evalue=7e-21,
Organism=Homo sapiens, GI4506971, Length=301, Percent_Identity=28.9036544850498, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=32.4561403508772, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=32.4561403508772, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=32.4561403508772, Blast_Score=89, Evalue=5e-18,
Organism=Homo sapiens, GI58219066, Length=240, Percent_Identity=28.3333333333333, Blast_Score=81, Evalue=1e-15,
Organism=Homo sapiens, GI37537552, Length=233, Percent_Identity=27.0386266094421, Blast_Score=79, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI115533076, Length=115, Percent_Identity=41.7391304347826, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33999; Mature: 33999

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKVLEAISNIAGKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
KIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMVYL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCCCCCCCEEEEE
AKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVV
ECCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKLFPKTVTKGMTVIPFISVVAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHH
YITAFILRLDEGTRRAISIKVGMQNSGLGVALTTAHFGPAAALPSVLAAVWHNIAGPILA
HHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TIWSKNAKDTFSDETLSVNIEK
HHHCCCCCCCCCCCEEEEEECC
>Mature Secondary Structure
MKVLEAISNIAGKYFAFWVICIATIAYFIPAPFLGLNSYITILLGVVMFGMGLTLKAVDF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEE
KIIATKPLPVIIGVCAQFIIMPLVAYVLAYVMNLPAELAAGLVLLGSVPGGTASNVMVYL
EEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCCCCCCCEEEEE
AKGNLALSIAMTSLSTLLAPIATPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVV
ECCCEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
KKLFPKTVTKGMTVIPFISVVAIIIIVSAVVSANVSSITSSGLLIFIAVMLHNAFGFLLG
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHHHHHHHHHHHHHHHHH
YITAFILRLDEGTRRAISIKVGMQNSGLGVALTTAHFGPAAALPSVLAAVWHNIAGPILA
HHHHHHHHHCCCCCEEEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
TIWSKNAKDTFSDETLSVNIEK
HHHCCCCCCCCCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]