Click here to switch to the map view.

The map label for this gene is ywqM [H]

Identifier: 222096947

GI number: 222096947

Start: 3228762

End: 3229655

Strand: Reverse

Name: ywqM [H]

Synonym: BCQ_3287

Alternate gene names: 222096947

Gene position: 3229655-3228762 (Counterclockwise)

Preceding gene: 222096949

Following gene: 222096946

Centisome position: 61.94

GC content: 36.35

Gene sequence:

>894_bases
ATGGAGATAAAACAATTAATTACCTTTAAAATCGCCGCGGACACTTTGAACTTTACCCAAACTGCGAAGAAATTAAACTT
TGCTCAATCAAGCGTAACGGCGCAAATTAAAACGTTAGAAGCTGAGCTAGGTACGCCGTTATTTGAAAGATTAGGGAAAC
GTCTTTTCTTAACCGAAGCAGGAAGAAAGTTTCAACTATATGCGGACAAGATAATCGTACTTAGTAACGAAGCGAAGACG
GCTGTGAAAGATGATGAAGAAATAGCTGGTACGTTAACCATTGGTGCGCAAGAAAGCCAATGTACATATAGACTTCCTTC
TATATTAAAGAGATTTAAAGCACAATTTCCTCAAATAAAACTTATATTTAAACCCGCACATTCCAATAAAGATGCGAAGG
AACAATTGATGGAAGGAAAAGTCGATCTTGCATTTATTTTGGATGAATGTAAAACAGAAGATGCTTTACATGTTGAGCCG
CTTATGAAAGAAGAATTAAAAGTAGTAGCTGCTCCAGGGCATCATTTACTCCAGCAAACTTCTGTTTCGATAAAAGATTT
AGAGACGGAAACACTTTTATTAACAGAACTAGGGTGCTCATATCGGACTTTATTTGAAGAGTTATTTCGCATCCAAGATG
TGTATCCAGCAAATAAGATTGAGTTTGTTAGTGTAGAGGCAATAAAACAATGTGTTATTGCAGATTTAGGTATAGCCGTT
TTACCGGCGATAGTAGTAGAAAAAGATATACGAGAGGGGACGATAAAAGAGTTACATCTAGAAAATACTATCAATCCAAT
TTTCACACAAATTGCTTGGCATAAAGATAAATGGATGACAGTGCCACTGCAGCAATTTATTGATGTGACGAGGGAGTTTT
TTACAACGGATTAA

Upstream 100 bases:

>100_bases
TTTGTCGATGCTCTTTATCATACAATACAAATATCAATAGAAAAAGAGGATTATTTCGATGAAATCAATCGGGAATTCCG
ATTGAAAAGAGGGATGATAA

Downstream 100 bases:

>100_bases
GTGGAGAAATATTTATTTTCTATAAAAGAAAAAATGGTAATTTTGTATTGAGAATCGATGCTTGCATGAAACGAGTATCG
GTTCTTTATGTTTTAAATAA

Product: transcriptional regulator, lysr family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 297; Mature: 297

Protein sequence:

>297_residues
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKIIVLSNEAKT
AVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEP
LMKEELKVVAAPGHHLLQQTSVSIKDLETETLLLTELGCSYRTLFEELFRIQDVYPANKIEFVSVEAIKQCVIADLGIAV
LPAIVVEKDIREGTIKELHLENTINPIFTQIAWHKDKWMTVPLQQFIDVTREFFTTD

Sequences:

>Translated_297_residues
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKIIVLSNEAKT
AVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEP
LMKEELKVVAAPGHHLLQQTSVSIKDLETETLLLTELGCSYRTLFEELFRIQDVYPANKIEFVSVEAIKQCVIADLGIAV
LPAIVVEKDIREGTIKELHLENTINPIFTQIAWHKDKWMTVPLQQFIDVTREFFTTD
>Mature_297_residues
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEAGRKFQLYADKIIVLSNEAKT
AVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIKLIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEP
LMKEELKVVAAPGHHLLQQTSVSIKDLETETLLLTELGCSYRTLFEELFRIQDVYPANKIEFVSVEAIKQCVIADLGIAV
LPAIVVEKDIREGTIKELHLENTINPIFTQIAWHKDKWMTVPLQQFIDVTREFFTTD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082132, Length=304, Percent_Identity=27.9605263157895, Blast_Score=132, Evalue=3e-32,
Organism=Escherichia coli, GI1787806, Length=289, Percent_Identity=29.757785467128, Blast_Score=131, Evalue=7e-32,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=28.0276816608997, Blast_Score=112, Evalue=3e-26,
Organism=Escherichia coli, GI1790262, Length=258, Percent_Identity=28.2945736434109, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790208, Length=256, Percent_Identity=27.734375, Blast_Score=86, Evalue=4e-18,
Organism=Escherichia coli, GI157672245, Length=291, Percent_Identity=23.7113402061856, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787530, Length=263, Percent_Identity=25.4752851711027, Blast_Score=82, Evalue=5e-17,
Organism=Escherichia coli, GI1788296, Length=244, Percent_Identity=25.8196721311475, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1790399, Length=260, Percent_Identity=27.3076923076923, Blast_Score=79, Evalue=4e-16,
Organism=Escherichia coli, GI1787879, Length=250, Percent_Identity=26, Blast_Score=74, Evalue=9e-15,
Organism=Escherichia coli, GI1786401, Length=302, Percent_Identity=24.5033112582781, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788297, Length=250, Percent_Identity=25.6, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1788887, Length=294, Percent_Identity=24.8299319727891, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI145693105, Length=249, Percent_Identity=24.4979919678715, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788748, Length=247, Percent_Identity=21.0526315789474, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788706, Length=257, Percent_Identity=24.5136186770428, Blast_Score=67, Evalue=1e-12,
Organism=Escherichia coli, GI1788626, Length=253, Percent_Identity=25.296442687747, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI87081904, Length=261, Percent_Identity=25.2873563218391, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1789173, Length=253, Percent_Identity=26.0869565217391, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33682; Mature: 33682

Theoretical pI: Translated: 5.48; Mature: 5.48

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEA
CCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECC
GRKFQLYADKIIVLSNEAKTAVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIK
CCEEEEEEEEEEEEECCCCHHCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
LIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEPLMKEELKVVAAPGHHLLQQT
EEEECCCCCCHHHHHHHCCCCHHEEEEHHHCCCCCEECCHHHHHCCEEEECCCHHHHHHH
SVSIKDLETETLLLTELGCSYRTLFEELFRIQDVYPANKIEFVSVEAIKQCVIADLGIAV
CCHHHHCCHHEEEEHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LPAIVVEKDIREGTIKELHLENTINPIFTQIAWHKDKWMTVPLQQFIDVTREFFTTD
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCC
>Mature Secondary Structure
MEIKQLITFKIAADTLNFTQTAKKLNFAQSSVTAQIKTLEAELGTPLFERLGKRLFLTEA
CCHHHEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCEEEEECC
GRKFQLYADKIIVLSNEAKTAVKDDEEIAGTLTIGAQESQCTYRLPSILKRFKAQFPQIK
CCEEEEEEEEEEEEECCCCHHCCCCHHHEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEE
LIFKPAHSNKDAKEQLMEGKVDLAFILDECKTEDALHVEPLMKEELKVVAAPGHHLLQQT
EEEECCCCCCHHHHHHHCCCCHHEEEEHHHCCCCCEECCHHHHHCCEEEECCCHHHHHHH
SVSIKDLETETLLLTELGCSYRTLFEELFRIQDVYPANKIEFVSVEAIKQCVIADLGIAV
CCHHHHCCHHEEEEHHHCCHHHHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHH
LPAIVVEKDIREGTIKELHLENTINPIFTQIAWHKDKWMTVPLQQFIDVTREFFTTD
HHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHCCCCCEEEECHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]