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The map label for this gene is rtcB [H]

Identifier: 222096475

GI number: 222096475

Start: 2753072

End: 2754259

Strand: Reverse

Name: rtcB [H]

Synonym: BCQ_2815

Alternate gene names: 222096475

Gene position: 2754259-2753072 (Counterclockwise)

Preceding gene: 222096476

Following gene: 222096473

Centisome position: 52.82

GC content: 34.18

Gene sequence:

>1188_bases
ATGTTGAAATTACAAGGAAAATACAATGAAGCGAAAGTATTTACGAATAACGTTGATGAGACTGCGACAGGGCAGATTAT
TGATCTTTGTAACCAAGAATTTGTAAAGGATAGTCAAATTCGTATTATGCCAGATACACATGCGGGAGCAGGGTGTACGA
TTGGGACAACAATGACAATACAAGATAAAATCGTTCCTAATCTTGTAGGGGTAGACATTGGTTGTGGTATGGAAGTTGTT
GTAATTGATAAGAAAAAAGAAGAAATTAATTTCGATTATTTAGACGAAACAATTCGTAAATTCGTTCCAAGTGGTTTTCG
TATCCGAGATAAAGAACATCGATTCTCAAAAATGATTGATTTTGATGGTGTGAGAGCACCATTTACATTACAACGCGCTC
AAAAAAGTATAGGTACTCTTGGAGGAGGGAATCATTTCATCGAACTAAATGAAGACGATAAAGGGAATGTATATATTGTC
ATTCATAGTGGTTCTCGTAATTTAGGAAAGCAAATAGCAGAGTATTATCAGAACTTCGCATATGAACAACTCATTGATGT
TACATCAATGAAAGATGAGATTATTAAGAGATTAATGAAAGAAGGGAGAGAAAAAGAAATACAAGAAACTTTACGTGGAA
TAAAGAAGCCTAATATTCGAAAAGAATTAGCTTATTTAGAAGGACAGGGATTCAAAGATTATATGAATGACATGAATATT
GCTCAAAAGTATGCTGCGTTAAATCGTAAAGCAATGATCGATGAAATTGTTACGAAAATGGACTGGAAAGTAACCGATCA
ATTTACTACAATACATAACTATATAGACATAGAAAATATGATTCTACGAAAAGGTGCTATTTCAGCTCAGAAAGATGAAC
GAGTCATTATTCCAATTAACATGAGAGATGGTTCAATTATTGCGTTTGGTAAAGGTAATCCAGATTGGAACTATTCTGGT
CCGCATGGGGCAGGACGTATCATGAGTCGCAAGAAGGCTAAAGAATTATTGAGTCTAGAGGACTTCCAAAATACGATGAC
AGAAGTTTGGACTACATCGGTAGCAGAGAGCACAATTGATGAGGCACCAATGGTATACAAGCCAATGAATGAAATTATCG
AAAATACGAAAGAGACAATAGATATAAAGCATATTATTAAGCCATTATATAATTTTAAAGCGAATTAA

Upstream 100 bases:

>100_bases
ATCATACATATATAATGGAAAGCAAAAGGTGGATGAGAGTAATGATGAGAACAGAAACAACGTAATAAAATAATTCTTTC
AAAAGGAAGGGGAATGAAAG

Downstream 100 bases:

>100_bases
AATGATAAAAGACCGCACATGAAGTGGAAGCCATGTGCGATCTTTTAGATAAGCAGGGTATTACATCGTCTCGCTAATTT
TAGTTTCACTATTAGTGTTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 395; Mature: 395

Protein sequence:

>395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFIELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSMKDEIIKRLMKEGREKEIQETLRGIKKPNIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKVTDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNYSG
PHGAGRIMSRKKAKELLSLEDFQNTMTEVWTTSVAESTIDEAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN

Sequences:

>Translated_395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFIELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSMKDEIIKRLMKEGREKEIQETLRGIKKPNIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKVTDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNYSG
PHGAGRIMSRKKAKELLSLEDFQNTMTEVWTTSVAESTIDEAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN
>Mature_395_residues
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTIQDKIVPNLVGVDIGCGMEVV
VIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMIDFDGVRAPFTLQRAQKSIGTLGGGNHFIELNEDDKGNVYIV
IHSGSRNLGKQIAEYYQNFAYEQLIDVTSMKDEIIKRLMKEGREKEIQETLRGIKKPNIRKELAYLEGQGFKDYMNDMNI
AQKYAALNRKAMIDEIVTKMDWKVTDQFTTIHNYIDIENMILRKGAISAQKDERVIIPINMRDGSIIAFGKGNPDWNYSG
PHGAGRIMSRKKAKELLSLEDFQNTMTEVWTTSVAESTIDEAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Escherichia coli, GI2367224, Length=415, Percent_Identity=32.5301204819277, Blast_Score=179, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 45100; Mature: 45100

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECEEEEE
QDKIVPNLVGVDIGCGMEVVVIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMID
HHHHCCHHHCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHC
FDGVRAPFTLQRAQKSIGTLGGGNHFIELNEDDKGNVYIVIHSGSRNLGKQIAEYYQNFA
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
YEQLIDVTSMKDEIIKRLMKEGREKEIQETLRGIKKPNIRKELAYLEGQGFKDYMNDMNI
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
AQKYAALNRKAMIDEIVTKMDWKVTDQFTTIHNYIDIENMILRKGAISAQKDERVIIPIN
HHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
MRDGSIIAFGKGNPDWNYSGPHGAGRIMSRKKAKELLSLEDFQNTMTEVWTTSVAESTID
ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MLKLQGKYNEAKVFTNNVDETATGQIIDLCNQEFVKDSQIRIMPDTHAGAGCTIGTTMTI
CEEECCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCEECEEEEE
QDKIVPNLVGVDIGCGMEVVVIDKKKEEINFDYLDETIRKFVPSGFRIRDKEHRFSKMID
HHHHCCHHHCEEECCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCEECCHHHHHHHHHC
FDGVRAPFTLQRAQKSIGTLGGGNHFIELNEDDKGNVYIVIHSGSRNLGKQIAEYYQNFA
CCCCCCCHHHHHHHHHHCCCCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHH
YEQLIDVTSMKDEIIKRLMKEGREKEIQETLRGIKKPNIRKELAYLEGQGFKDYMNDMNI
HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHH
AQKYAALNRKAMIDEIVTKMDWKVTDQFTTIHNYIDIENMILRKGAISAQKDERVIIPIN
HHHHHHHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEE
MRDGSIIAFGKGNPDWNYSGPHGAGRIMSRKKAKELLSLEDFQNTMTEVWTTSVAESTID
ECCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAPMVYKPMNEIIENTKETIDIKHIIKPLYNFKAN
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 9738023 [H]