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The map label for this gene is abrB [H]

Identifier: 222095641

GI number: 222095641

Start: 1959477

End: 1959764

Strand: Direct

Name: abrB [H]

Synonym: BCQ_1981

Alternate gene names: 222095641

Gene position: 1959477-1959764 (Clockwise)

Preceding gene: 222095640

Following gene: 222095642

Centisome position: 37.58

GC content: 30.21

Gene sequence:

>288_bases
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTAATTCCTAAAGAATTACGTGATGTATTGGG
AATACAAATTAAATCACCGCTTGAAATTTTCGTAGAAGAAGACAAAGTCATTTTACAAAAATATCAACCTTACAATGCTT
GTCAAATAACAGGTGATGTTTCAAATCAAAACATATCATTAGCAAATGGAAACATTACTGTTAGTATAGATGGAGCGAAA
TATTTAATAAAAGAAATAGAGAAGTTTTTAAACAAGAGTGAGGCTTAG

Upstream 100 bases:

>100_bases
TGAGTACAAAATTTTCTAAAAAGAGGCAGGTATTACCAAAAAGTGATAAAATGGAAAAAGCGAGGTGAAAAAATTAATAA
ATAGTAAGGGAGGAAGTAAT

Downstream 100 bases:

>100_bases
TCTTAATTTATATTATTTTAAAAATTTCATATCATTCTTGAAAGACAGTAAAAGGACCAATTTAGTGGTCCTTTTATTTT
GGTTATTGGTTGTACCAATC

Product: transition state regulatory protein, abrb

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 95; Mature: 95

Protein sequence:

>95_residues
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Sequences:

>Translated_95_residues
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA
>Mature_95_residues
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDVSNQNISLANGNITVSIDGAK
YLIKEIEKFLNKSEA

Specific function: Ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation. It controls the expression of genes spovG and tycA. AbrB binds to the tycA

COG id: COG2002

COG function: function code K; Regulators of stationary/sporulation gene expression

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.subtilis abh and spoVT [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006339
- InterPro:   IPR007159 [H]

Pfam domain/function: PF04014 SpoVT_AbrB [H]

EC number: NA

Molecular weight: Translated: 10618; Mature: 10618

Theoretical pI: Translated: 6.73; Mature: 6.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDV
CCCCHHHHHHHHCCCEECCHHHHHHHCEECCCCEEEEECCCCEEEHHCCCCCEEEEEECC
SNQNISLANGNITVSIDGAKYLIKEIEKFLNKSEA
CCCEEEEECCEEEEEECCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEEDKVILQKYQPYNACQITGDV
CCCCHHHHHHHHCCCEECCHHHHHHHCEECCCCEEEEECCCCEEEHHCCCCCEEEEEECC
SNQNISLANGNITVSIDGAKYLIKEIEKFLNKSEA
CCCEEEEECCEEEEEECCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 3145384; 2554317; 7584024; 9384377; 2504584; 1908787 [H]