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The map label for this gene is nrdF [H]

Identifier: 222095086

GI number: 222095086

Start: 1411704

End: 1412285

Strand: Direct

Name: nrdF [H]

Synonym: BCQ_1426

Alternate gene names: 222095086

Gene position: 1411704-1412285 (Clockwise)

Preceding gene: 222095085

Following gene: 222095087

Centisome position: 27.07

GC content: 36.08

Gene sequence:

>582_bases
ATGCGCGCTGTTAACTGGAATAAAAAAGAAGACGATTTCAGTTTAATGTTTTGGAAGCAAAACATCGCTCAGTTTTGGAC
AGAAGAAGAAATTGCGGTTTCGTCTGACAAAAATACTTGGGTGCAATTATCGAAAGAAGAGCAAATTGCTTATAAGCGTG
TATTAGGTGGTTTAACACTTTTAGATACGAAACAAGGTGGCGAAGGAATGCCTCTTGTACTTGTTCATCTTGAAAATTTA
CAAGCAAAAAGTGTATTAGCTTTCATGGGTGCTATGGAAGAAGTACATGCGAAGAGTTACAGTCATATTTTCACAACGTT
AGCTACTGAAGAAGAAATCGATGATATTTTCGAATGGGTAGACAACCATCCGTTACTTGAGAAAAAGGCTGGTATTATTA
CAAGTTACTATCGTCGTTTATTAAAGCCTGAAGTAACGAAAAAAGAGTTATACATGGCAATGGTAGCAAGTGTGTTCTTA
GAAAGTTACCTATTCTATAGTGGATTCTTCTATCCACTTTACTTAGCTGGTCAAGGAAAACTAACAGCAAGTGGTGAGAT
TATTAACCTTATTATCCGTTAA

Upstream 100 bases:

>100_bases
CCTGCTCATACTTGGTTTGTTCTACTAAACGGTTAGCTTTTCATTATTAGATGGAAATTTAACCGTTCAGTAGAACAATA
ATAGATATAGGGGTGATTCA

Downstream 100 bases:

>100_bases
CTAATAGCGGCTTTTGGTAGAGATACCAATTGAAAAACCCTTTTAATTGCTGGGAACCCCTATTGTAAATTTATCTGTTA
TATTATTGATGAATACATAC

Product: ribonucleoside-diphosphate reductase, beta subunit

Products: NA

Alternate protein names: Ribonucleotide reductase small subunit [H]

Number of amino acids: Translated: 193; Mature: 193

Protein sequence:

>193_residues
MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENL
QAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFL
ESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR

Sequences:

>Translated_193_residues
MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENL
QAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFL
ESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR
>Mature_193_residues
MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTLLDTKQGGEGMPLVLVHLENL
QAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWVDNHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFL
ESYLFYSGFFYPLYLAGQGKLTASGEIINLIIR

Specific function: Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides [H]

COG id: COG0208

COG function: function code F; Ribonucleotide reductase, beta subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribonucleoside diphosphate reductase small chain family [H]

Homologues:

Organism=Escherichia coli, GI1789031, Length=193, Percent_Identity=40.9326424870466, Blast_Score=146, Evalue=7e-37,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009078
- InterPro:   IPR012348
- InterPro:   IPR000358 [H]

Pfam domain/function: PF00268 Ribonuc_red_sm [H]

EC number: =1.17.4.1 [H]

Molecular weight: Translated: 22232; Mature: 22232

Theoretical pI: Translated: 5.10; Mature: 5.10

Prosite motif: PS00368 RIBORED_SMALL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTL
CCCCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCEE
LDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWV
EECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DNHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGK
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
LTASGEIINLIIR
EEECCCEEEEEEC
>Mature Secondary Structure
MRAVNWNKKEDDFSLMFWKQNIAQFWTEEEIAVSSDKNTWVQLSKEEQIAYKRVLGGLTL
CCCCCCCCCCCCCEEHHHHHHHHHHCCCCCEEEECCCCCEEEECCHHHHHHHHHHCCCEE
LDTKQGGEGMPLVLVHLENLQAKSVLAFMGAMEEVHAKSYSHIFTTLATEEEIDDIFEWV
EECCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
DNHPLLEKKAGIITSYYRRLLKPEVTKKELYMAMVASVFLESYLFYSGFFYPLYLAGQGK
CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECCCC
LTASGEIINLIIR
EEECCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9679200; 9384377 [H]