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The map label for this gene is sigW [H]

Identifier: 222094769

GI number: 222094769

Start: 1094741

End: 1095211

Strand: Direct

Name: sigW [H]

Synonym: BCQ_1107

Alternate gene names: 222094769

Gene position: 1094741-1095211 (Clockwise)

Preceding gene: 222094768

Following gene: 222094770

Centisome position: 21.0

GC content: 33.55

Gene sequence:

>471_bases
ATGAACAAGTATGGACAAGAAGTCTTACAGCTTGTGTATTCATATGTGAATAATAAAGAGGTTGCGGAGGATTTAACGCA
AGATATATTTGTGAAATGTTATAAATCTCTTCATACATATAAAGGGAATTCGAACTTAAAAACATGGCTATGGAGAATTG
CAATTAATCATTGTAAGGACTATTTAAAAAGTTGGTATAACAAAAAGGTCATCGTGACAGAGGATGACTTTACGTATATG
GGGAGTCAAAAAGAAAGTGTGGAACAAACTGTCATTCAAAATGCGGAGGATCGTGAACTGGCTTCTGCAGTAATGAATTT
ACCGATAAAATATCGAGAGGTGATTTATCTATTTTATTATGAGGAATTATCAATTAAAGAGGTTGCTATTGTAATAGAAG
TGAAGGAGAACACGATAAAAACGAGACTGAAAAAAGCAAAGGAGCTTTTGAAGAAAGGATTGGAGGAATAG

Upstream 100 bases:

>100_bases
CAGTGCGTCGTCTAATATATGGGAAGGAGGGAAGGCTGTGGATGAATTAATGATAGAAGCGTTTGAAATAGAAGATAAGG
AGGACCTTATCGACGAAATC

Downstream 100 bases:

>100_bases
TCAAATGGAAGATCGATTAAAAGGCTTACGAAAATCAATGGAGAACACAACTTTTAAACATTTGAGTTTTTCTGATCAGC
ACCAGAAGCGGGTGCATAAA

Product: RNA polymerase factor sigma c

Products: NA

Alternate protein names: Sigma-30 [H]

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MNKYGQEVLQLVYSYVNNKEVAEDLTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYM
GSQKESVEQTVIQNAEDRELASAVMNLPIKYREVIYLFYYEELSIKEVAIVIEVKENTIKTRLKKAKELLKKGLEE

Sequences:

>Translated_156_residues
MNKYGQEVLQLVYSYVNNKEVAEDLTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYM
GSQKESVEQTVIQNAEDRELASAVMNLPIKYREVIYLFYYEELSIKEVAIVIEVKENTIKTRLKKAKELLKKGLEE
>Mature_156_residues
MNKYGQEVLQLVYSYVNNKEVAEDLTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCKDYLKSWYNKKVIVTEDDFTYM
GSQKESVEQTVIQNAEDRELASAVMNLPIKYREVIYLFYYEELSIKEVAIVIEVKENTIKTRLKKAKELLKKGLEE

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor regulates genes such as algD, involved in alginate biosynthesis [H]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788926, Length=155, Percent_Identity=29.0322580645161, Blast_Score=76, Evalue=1e-15,

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR014286
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 18493; Mature: 18493

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKYGQEVLQLVYSYVNNKEVAEDLTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCKD
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YLKSWYNKKVIVTEDDFTYMGSQKESVEQTVIQNAEDRELASAVMNLPIKYREVIYLFYY
HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
EELSIKEVAIVIEVKENTIKTRLKKAKELLKKGLEE
CCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNKYGQEVLQLVYSYVNNKEVAEDLTQDIFVKCYKSLHTYKGNSNLKTWLWRIAINHCKD
CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
YLKSWYNKKVIVTEDDFTYMGSQKESVEQTVIQNAEDRELASAVMNLPIKYREVIYLFYY
HHHHHHCCCEEEECCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHH
EELSIKEVAIVIEVKENTIKTRLKKAKELLKKGLEE
CCCCCEEEEEEEEECHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8432708; 8378309; 7961421; 10984043; 7737518 [H]