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The map label for this gene is yocH [H]

Identifier: 222094546

GI number: 222094546

Start: 867142

End: 868545

Strand: Reverse

Name: yocH [H]

Synonym: BCQ_0884

Alternate gene names: 222094546

Gene position: 868545-867142 (Counterclockwise)

Preceding gene: 222094547

Following gene: 222094537

Centisome position: 16.66

GC content: 40.74

Gene sequence:

>1404_bases
ATGGAATTATTACAGAATATTAATGACCCGTTACGAAAGCTTTGTAATTTTATGTTTTTCGCAAATAAGAAAATAATGGT
TGCTATAATGAGGTCAACGAAAACAAATGCAATGGAGGCTATTATGAAAAAATTTATGGGTATAGCAACAGCAGCGGTTT
TTGGTCTTGGGATTTTCACAACATCTGCTAAAGCAGAAACGTTTGTAACAACTGATGTACTAAATGTACGAGAAAACCCA
ACTACTGAATCAAAAGTTGTCGGAAAATTATTAGATGGATATAAAGTTAACGTTTTACATACAGAAAACGGATGGTCAAA
AGTAAAATTGAATAGCGGTAAGGAAGCTTTCATTAGCGCTGACTACACAAAAGACACTTACTACGTAACAGCTAACGTAT
TAAACGTACGTGCTGGTGCAAACACAGACTCAGAGATTCTTGGGAAATTGAAACAAGATGACGTAATCGAAACAACACAC
CAAGTTGAAAATGGTTGGATCCAATTTGAATATAACGGAAAAACAGCTTACGTTCACGTTCCTTACTTAACAGGTAAAGC
TCCAGTTAAAGTTCAACCAGTAGTTAAAGCTGAAAAAACAACTACAGTTCAAGATACAGCTAAAGCCGTGGCAACAACTA
AAGCTCGTGAAGTAGCTGAAACGCAAGCAAAAGCTAAAGCGGAGGAAGCAACTAAAGCCCGCGAAGCAGCTGAAGCTCAA
GCAGCGGCTAAAGCTCGTGAAGCAGCTAAGGCTCAAGAGACAGCTAAAGCTCAGGCAGAAGCTAAAGCTCAAGAAGCAGC
TGAAGCTCAAGCAGAAGCTAAGGCTCAAGAAGCAGCTAAAGCTCGTGAAGCAGCTCAAGCTCAAGCAGTAGCTGAAGCTC
AAGCAGCGGCTAAAGCTCAAGAGGCAGCTAAAGCTCGTGAAGCAGCTAAAGCTCAAGAAGCAGCTGAAGCTCGTGAAGCA
GCTCAAGCAGTAGCTGAAGCTCAAGCAGAAGCTAAGGCTCAAGAAGCAGCTAAAGCTCGTGAAGCGGCTAAAGCTCAAAA
ACCAGCTACACAACAACCTGTTGCAAAAGAAACTGAAACAAGTGCACCATCATCTTCTCGTGAGTTACGCGTTGTAGCAA
CAGCTTACACAGCAGATCCACTTGAAAATGGTTATAAAGCAGGCGACCAAGTAAAATCAGCTTTAGGTCACAACTTAACA
GCTAATCCAAACATGAAACTAATCGCGGTTGATCCAAGTGTTATTCCATTAGGTTCAAAAGTATGGGTTGAAGGTTACGG
AGTAGCAATCGCTGGTGATACTGGTGGAGCTATTAAAGGAAATAAAATCGATGTTTTAATGCCAGACAAAGGTACATCAA
GTAACTGGGGACGTAAAACAGTTACAGTTAAAGTATTAAACTAG

Upstream 100 bases:

>100_bases
AAATACTATTAACCTATCAGAAATTGAAATACTACCTTTTTTATGCATCATATGCTCTAACCTCCCCTAAAAACTATAAG
AAAGCGCTTTTAGGATATTA

Downstream 100 bases:

>100_bases
TTTGTAAAAAAAGAGTCAGTCTCATTGAGGCTGACTCTTTTTTTATGATTCTTACATTCTCTCTTTCTCGTAAGAAACGA
AGAGCAATGATAATCTCTGA

Product: enterotoxin / cell-wall binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 467; Mature: 467

Protein sequence:

>467_residues
MELLQNINDPLRKLCNFMFFANKKIMVAIMRSTKTNAMEAIMKKFMGIATAAVFGLGIFTTSAKAETFVTTDVLNVRENP
TTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISADYTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTH
QVENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTTTVQDTAKAVATTKAREVAETQAKAKAEEATKAREAAEAQ
AAAKAREAAKAQETAKAQAEAKAQEAAEAQAEAKAQEAAKAREAAQAQAVAEAQAAAKAQEAAKAREAAKAQEAAEAREA
AQAVAEAQAEAKAQEAAKAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLT
ANPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN

Sequences:

>Translated_467_residues
MELLQNINDPLRKLCNFMFFANKKIMVAIMRSTKTNAMEAIMKKFMGIATAAVFGLGIFTTSAKAETFVTTDVLNVRENP
TTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISADYTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTH
QVENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTTTVQDTAKAVATTKAREVAETQAKAKAEEATKAREAAEAQ
AAAKAREAAKAQETAKAQAEAKAQEAAEAQAEAKAQEAAKAREAAQAQAVAEAQAAAKAQEAAKAREAAKAQEAAEAREA
AQAVAEAQAEAKAQEAAKAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLT
ANPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN
>Mature_467_residues
MELLQNINDPLRKLCNFMFFANKKIMVAIMRSTKTNAMEAIMKKFMGIATAAVFGLGIFTTSAKAETFVTTDVLNVRENP
TTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISADYTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTH
QVENGWIQFEYNGKTAYVHVPYLTGKAPVKVQPVVKAEKTTTVQDTAKAVATTKAREVAETQAKAKAEEATKAREAAEAQ
AAAKAREAAKAQETAKAQAEAKAQEAAEAQAEAKAQEAAKAREAAQAQAVAEAQAAAKAQEAAKAREAAKAQEAAEAREA
AQAVAEAQAEAKAQEAAKAREAAKAQKPATQQPVAKETETSAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLT
ANPNMKLIAVDPSVIPLGSKVWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN

Specific function: Unknown

COG id: COG3584

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Secreted, cell wall. Note=Released into the medium [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 2 LysM repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010611
- InterPro:   IPR014733
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF06725 3D; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 49567; Mature: 49567

Theoretical pI: Translated: 9.59; Mature: 9.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELLQNINDPLRKLCNFMFFANKKIMVAIMRSTKTNAMEAIMKKFMGIATAAVFGLGIFT
CCHHHHCCHHHHHHHHHHHHCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHEE
TSAKAETFVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISA
CCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEEEE
DYTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQVENGWIQFEYNGKTAYVHV
CCCCCEEEEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCEEEEEECCEEEEEEE
PYLTGKAPVKVQPVVKAEKTTTVQDTAKAVATTKAREVAETQAKAKAEEATKAREAAEAQ
EEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAKAREAAKAQETAKAQAEAKAQEAAEAQAEAKAQEAAKAREAAQAQAVAEAQAAAKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAKAREAAKAQEAAEAREAAQAVAEAQAEAKAQEAAKAREAAKAQKPATQQPVAKETET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCC
SAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLTANPNMKLIAVDPSVIPLGSK
CCCCCCCCEEEEEEEEECCHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCE
VWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN
EEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEC
>Mature Secondary Structure
MELLQNINDPLRKLCNFMFFANKKIMVAIMRSTKTNAMEAIMKKFMGIATAAVFGLGIFT
CCHHHHCCHHHHHHHHHHHHCCCEEEEEEEHHCCHHHHHHHHHHHHHHHHHHHHHHHHEE
TSAKAETFVTTDVLNVRENPTTESKVVGKLLDGYKVNVLHTENGWSKVKLNSGKEAFISA
CCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHCCEEEEEEEECCCCEEEEECCCCEEEEEE
DYTKDTYYVTANVLNVRAGANTDSEILGKLKQDDVIETTHQVENGWIQFEYNGKTAYVHV
CCCCCEEEEEEEEEEEECCCCCCHHHHHHHCCCHHHHHHHHHCCCEEEEEECCEEEEEEE
PYLTGKAPVKVQPVVKAEKTTTVQDTAKAVATTKAREVAETQAKAKAEEATKAREAAEAQ
EEECCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AAAKAREAAKAQETAKAQAEAKAQEAAEAQAEAKAQEAAKAREAAQAQAVAEAQAAAKAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EAAKAREAAKAQEAAEAREAAQAVAEAQAEAKAQEAAKAREAAKAQKPATQQPVAKETET
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCC
SAPSSSRELRVVATAYTADPLENGYKAGDQVKSALGHNLTANPNMKLIAVDPSVIPLGSK
CCCCCCCCEEEEEEEEECCHHHHCCCCHHHHHHHHCCCCCCCCCEEEEEECCCEEECCCE
VWVEGYGVAIAGDTGGAIKGNKIDVLMPDKGTSSNWGRKTVTVKVLN
EEEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]