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The map label for this gene is rbsC [H]

Identifier: 222094503

GI number: 222094503

Start: 827452

End: 828507

Strand: Reverse

Name: rbsC [H]

Synonym: BCQ_0841

Alternate gene names: 222094503

Gene position: 828507-827452 (Counterclockwise)

Preceding gene: 222094504

Following gene: 222094495

Centisome position: 15.89

GC content: 35.13

Gene sequence:

>1056_bases
GTGAATACTTACCAAACGAACTATCTCCTGAACAGCTTTTACATTTATCTGAAGGGAGTTATTCCATTGAATCTCGTTCA
TAAAACTAAAAAAACAGATTTACCTACTCATCTTTTTTATCAATTCAGTACAATTGCTATTATTATAGGTGTTACAATTT
TTTTCTCTATCGTCAATGATTCTTTTTTAACATATAACAATATTAGTGATATTTTACGTTCTATTTCCATCGTAACGTTA
CTTGCAATCGGCGTTACCTTTACATTAATTGTAGATGGATTTGATTTATCAGTTGGCTCTACCGCTAGTTTAGCAACAAT
TGCCGCTGCTTCTTGTCTCGTTTTATATCGACAAGAACTATTAGTTACACTCCTTGTTCCTATTCTTTGCGGGGTATTAG
TTGGGTTATTAAATGCACTACTCGTTATCCGAATTAAACTACCAGATTTACTAGCTACATTAAGTATCATGTATATTGTT
AATGGACTACACTTAACATTTTCAAAAGGATCTTCAATTTATGAAGGAATGTCCGGTGCAACAGGACATTTTATTCCATC
CTTTTTATTTATCGGTCAAGGTTTCGTCTTAGGAATTCCAGTCCCTGTCATTATCATGCTTACTGTCGTTTTAATTGCAC
ATCTATTTTTAGAAAAAACAACGTACGGTCGTTTCTTTTATATGACTGGTGGGAATCGAGAAGCTGCTAGATTAGCTGGT
ATTCCTACTGATCGTTACCGTGTATATGCTTACATGATTAGTGGTTTACTAGCTTCTATTGGCGGCATTATTCTATGCAG
CCGCGTTGGAACAGGACAAGTTTCAGCTGGCGCCCCATTATTAATGGATGCAGTCGCAGCTGCCTATATCGGTTACGCAA
TGTTCGGTGCTAAGAAACCAAATATAGTCGGAACATTTCTCGGCTCAGTATTAATTGGAATTATATTAAATGGACTCACA
ATGATGAACGTCCCTTATTATGCACAAGATATTATTAAAGGCAGTATTTTAATTACAGCCCTAGCCTTTTCATTTATTAA
AAAGAAGCGTAAATAA

Upstream 100 bases:

>100_bases
ACAGAAAACGGAAGTTCCGTCATTTATTTCACAGGAGAACAAGATGAAGCACTACATATCGCTGATCGCATTCTTATACT
GGCGAACGGAGAATTTGTAG

Downstream 100 bases:

>100_bases
AAAGTAGAGCATCGAATTCGATGCTCTACTTTCCCTTTGCAACAATCACACGAAAGCCTCCACCATTACTAAACTATGAA
AAAGATAACAGCATTTAAAA

Product: ribose ABC transporter permease

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 351; Mature: 351

Protein sequence:

>351_residues
MNTYQTNYLLNSFYIYLKGVIPLNLVHKTKKTDLPTHLFYQFSTIAIIIGVTIFFSIVNDSFLTYNNISDILRSISIVTL
LAIGVTFTLIVDGFDLSVGSTASLATIAAASCLVLYRQELLVTLLVPILCGVLVGLLNALLVIRIKLPDLLATLSIMYIV
NGLHLTFSKGSSIYEGMSGATGHFIPSFLFIGQGFVLGIPVPVIIMLTVVLIAHLFLEKTTYGRFFYMTGGNREAARLAG
IPTDRYRVYAYMISGLLASIGGIILCSRVGTGQVSAGAPLLMDAVAAAYIGYAMFGAKKPNIVGTFLGSVLIGIILNGLT
MMNVPYYAQDIIKGSILITALAFSFIKKKRK

Sequences:

>Translated_351_residues
MNTYQTNYLLNSFYIYLKGVIPLNLVHKTKKTDLPTHLFYQFSTIAIIIGVTIFFSIVNDSFLTYNNISDILRSISIVTL
LAIGVTFTLIVDGFDLSVGSTASLATIAAASCLVLYRQELLVTLLVPILCGVLVGLLNALLVIRIKLPDLLATLSIMYIV
NGLHLTFSKGSSIYEGMSGATGHFIPSFLFIGQGFVLGIPVPVIIMLTVVLIAHLFLEKTTYGRFFYMTGGNREAARLAG
IPTDRYRVYAYMISGLLASIGGIILCSRVGTGQVSAGAPLLMDAVAAAYIGYAMFGAKKPNIVGTFLGSVLIGIILNGLT
MMNVPYYAQDIIKGSILITALAFSFIKKKRK
>Mature_351_residues
MNTYQTNYLLNSFYIYLKGVIPLNLVHKTKKTDLPTHLFYQFSTIAIIIGVTIFFSIVNDSFLTYNNISDILRSISIVTL
LAIGVTFTLIVDGFDLSVGSTASLATIAAASCLVLYRQELLVTLLVPILCGVLVGLLNALLVIRIKLPDLLATLSIMYIV
NGLHLTFSKGSSIYEGMSGATGHFIPSFLFIGQGFVLGIPVPVIIMLTVVLIAHLFLEKTTYGRFFYMTGGNREAARLAG
IPTDRYRVYAYMISGLLASIGGIILCSRVGTGQVSAGAPLLMDAVAAAYIGYAMFGAKKPNIVGTFLGSVLIGIILNGLT
MMNVPYYAQDIIKGSILITALAFSFIKKKRK

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790191, Length=315, Percent_Identity=32.6984126984127, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1789992, Length=365, Percent_Identity=30.1369863013699, Blast_Score=135, Evalue=6e-33,
Organism=Escherichia coli, GI145693152, Length=317, Percent_Identity=31.5457413249211, Blast_Score=125, Evalue=3e-30,
Organism=Escherichia coli, GI1790524, Length=327, Percent_Identity=31.4984709480122, Blast_Score=123, Evalue=2e-29,
Organism=Escherichia coli, GI1788896, Length=342, Percent_Identity=26.3157894736842, Blast_Score=111, Evalue=6e-26,
Organism=Escherichia coli, GI1787793, Length=295, Percent_Identity=28.8135593220339, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI1787794, Length=316, Percent_Identity=29.1139240506329, Blast_Score=100, Evalue=1e-22,
Organism=Escherichia coli, GI1788471, Length=293, Percent_Identity=29.3515358361775, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI87082395, Length=259, Percent_Identity=27.7992277992278, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI145693214, Length=271, Percent_Identity=30.6273062730627, Blast_Score=79, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 37986; Mature: 37986

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTYQTNYLLNSFYIYLKGVIPLNLVHKTKKTDLPTHLFYQFSTIAIIIGVTIFFSIVND
CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
SFLTYNNISDILRSISIVTLLAIGVTFTLIVDGFDLSVGSTASLATIAAASCLVLYRQEL
CCEEECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVTLLVPILCGVLVGLLNALLVIRIKLPDLLATLSIMYIVNGLHLTFSKGSSIYEGMSGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCC
TGHFIPSFLFIGQGFVLGIPVPVIIMLTVVLIAHLFLEKTTYGRFFYMTGGNREAARLAG
CCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCC
IPTDRYRVYAYMISGLLASIGGIILCSRVGTGQVSAGAPLLMDAVAAAYIGYAMFGAKKP
CCCHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
NIVGTFLGSVLIGIILNGLTMMNVPYYAQDIIKGSILITALAFSFIKKKRK
CHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNTYQTNYLLNSFYIYLKGVIPLNLVHKTKKTDLPTHLFYQFSTIAIIIGVTIFFSIVND
CCCCCHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC
SFLTYNNISDILRSISIVTLLAIGVTFTLIVDGFDLSVGSTASLATIAAASCLVLYRQEL
CCEEECCHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHHHHHHHH
LVTLLVPILCGVLVGLLNALLVIRIKLPDLLATLSIMYIVNGLHLTFSKGSSIYEGMSGA
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEECCCCHHHHCCCCC
TGHFIPSFLFIGQGFVLGIPVPVIIMLTVVLIAHLFLEKTTYGRFFYMTGGNREAARLAG
CCHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHCC
IPTDRYRVYAYMISGLLASIGGIILCSRVGTGQVSAGAPLLMDAVAAAYIGYAMFGAKKP
CCCHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCC
NIVGTFLGSVLIGIILNGLTMMNVPYYAQDIIKGSILITALAFSFIKKKRK
CHHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]