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The map label for this gene is yhdI [H]

Identifier: 222094334

GI number: 222094334

Start: 639336

End: 640736

Strand: Direct

Name: yhdI [H]

Synonym: BCQ_0648

Alternate gene names: 222094334

Gene position: 639336-640736 (Clockwise)

Preceding gene: 222094331

Following gene: 222094338

Centisome position: 12.26

GC content: 34.98

Gene sequence:

>1401_bases
ATGTTAGAATTAACGCCTAATTTAAATGCGAAAAGCAAAATAGCATTGTATGTGCAATTGTATGAGTATATAAAAAAAGA
GATTAAAGATGGAACGATTCCGGCTTTTACAAAATTACCTGCAAAAAGAAAACTGGCGAGTTATTTACAAGTGAGTAAGA
ATACAGTAGAAGCGGCTTACGAACAATTACTTGCAGAAGGTTATATTGAGTCGGCATCGAGAAAAGGTTATTTTGTATGT
AAAGTTGAACAAATGATTTATGTAGAAGGAAGCGATGCGAAAGTAGAAGAAGTACCGTTTCGGGAGGGGAACTATAAATT
TGATTTCACCCAAACAGGGGTTGATACAAAAAGTTTTCCGTTCACTATGTACCGCAAGCTTATAAATGATGTATGGCAGC
CACATAATAATGAGTTACTTTTTCTTGGACACCCTCAAGGGGAATGGAGCTTAAGGGAGGAAATTGCAAAATATTTGTAT
GAATCTAGAGGTGTGCGTTGTTCAGCTAGTCAAATTGTATTAGGAGCGGGAACACAAATATTAGTGAAATTACTTTTTCA
ATTGTTGAAGGGAAGTAATTATGCAGTCGAAAACCCAGGTTATCATAGGAAAATGGTTGTTTTTGAACAGGGAGAAGAGA
AGGTTCAAATGTTGTCTTTAGACAGGGACGGAATTTGTATGGCAGATTTAGAAAATAGCGATGCAAATGTTGTATTTGTA
ACTCCATCTCATCAATTCCCATATGGAATGATTATGCCTATTACGAGGAGGACGCAGCTTTTACAATGGGCGAAGAAAGA
GGAAGACAGGTATATTATTGAAGATGATTACGATAGTGAATTCCGTTATTCAGGAAAGCCAATTCCGGCACTACAAGGGT
TAGATACAGATGGGAAAGTTATTTATATGGGGACGTTATCAAAAGCTTTGTTGCCCTCACTACGGATGAGCTATATAGTA
TTACCGAAGAATTTAATTAAAAAGTATCAAAAGGAATATTTGTTTTATACACAAAGTGTTTCAAGAATGGATCAAGAAGT
GATTAGAAAGTTTTTAAATGAAGGTTATTGGGAAAAACATATTCATAAAATGCGTGTCGTCTATCGGAAAAAGAGGGATC
GACTCGTTTTTGAAATAGGAAAGTATTTCTCTAATCGTGTTGAGGTAATAGGGGAAGATTCGGGATTACACATTTTATTA
AAAGTGCATAATGGAATGCGAGAAGAAGAACTAATTAAAGAAGCTGCAAAATATAGTATTAAAATATATCCTGTTTCTAC
GTACTACAAAGACGATACTGCACCTGAAAATGTAGTTTTACTTGGTTTTGCGATTTTATCAGAAGAAGAAATTGCGCAAG
CGATTCAACTATTAAATACAGCGTGGTTTCGAAAAAAATAA

Upstream 100 bases:

>100_bases
GTATTTGATTTTTTATGTGTGACATGATAAAAGGAATTATATATAACTTCTGGTACTCTAAAAAGTATCAGATTTAAGTT
TTATCAAGGGGTCAGATGTT

Downstream 100 bases:

>100_bases
AAAAACATCCTCATACACGAGAGGATGTTTTTTATTATTTATTTTCATCTAAGAATAAGACCATATGCTCTTCGTCCCAA
TATTGTCCGTTATATTTTAA

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 466; Mature: 466

Protein sequence:

>466_residues
MLELTPNLNAKSKIALYVQLYEYIKKEIKDGTIPAFTKLPAKRKLASYLQVSKNTVEAAYEQLLAEGYIESASRKGYFVC
KVEQMIYVEGSDAKVEEVPFREGNYKFDFTQTGVDTKSFPFTMYRKLINDVWQPHNNELLFLGHPQGEWSLREEIAKYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEEKVQMLSLDRDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKHIHKMRVVYRKKRDRLVFEIGKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIKEAAKYSIKIYPVSTYYKDDTAPENVVLLGFAILSEEEIAQAIQLLNTAWFRKK

Sequences:

>Translated_466_residues
MLELTPNLNAKSKIALYVQLYEYIKKEIKDGTIPAFTKLPAKRKLASYLQVSKNTVEAAYEQLLAEGYIESASRKGYFVC
KVEQMIYVEGSDAKVEEVPFREGNYKFDFTQTGVDTKSFPFTMYRKLINDVWQPHNNELLFLGHPQGEWSLREEIAKYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEEKVQMLSLDRDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKHIHKMRVVYRKKRDRLVFEIGKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIKEAAKYSIKIYPVSTYYKDDTAPENVVLLGFAILSEEEIAQAIQLLNTAWFRKK
>Mature_466_residues
MLELTPNLNAKSKIALYVQLYEYIKKEIKDGTIPAFTKLPAKRKLASYLQVSKNTVEAAYEQLLAEGYIESASRKGYFVC
KVEQMIYVEGSDAKVEEVPFREGNYKFDFTQTGVDTKSFPFTMYRKLINDVWQPHNNELLFLGHPQGEWSLREEIAKYLY
ESRGVRCSASQIVLGAGTQILVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEEKVQMLSLDRDGICMADLENSDANVVFV
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKVIYMGTLSKALLPSLRMSYIV
LPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKHIHKMRVVYRKKRDRLVFEIGKYFSNRVEVIGEDSGLHILL
KVHNGMREEELIKEAAKYSIKIYPVSTYYKDDTAPENVVLLGFAILSEEEIAQAIQLLNTAWFRKK

Specific function: Unknown

COG id: COG1167

COG function: function code KE; Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Homo sapiens, GI7705897, Length=308, Percent_Identity=23.0519480519481, Blast_Score=79, Evalue=1e-14,
Organism=Homo sapiens, GI33469970, Length=308, Percent_Identity=23.0519480519481, Blast_Score=79, Evalue=1e-14,
Organism=Escherichia coli, GI1787710, Length=432, Percent_Identity=24.537037037037, Blast_Score=105, Evalue=5e-24,
Organism=Escherichia coli, GI1790797, Length=471, Percent_Identity=23.1422505307856, Blast_Score=100, Evalue=3e-22,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004839
- InterPro:   IPR000524
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00155 Aminotran_1_2; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 54093; Mature: 54093

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLELTPNLNAKSKIALYVQLYEYIKKEIKDGTIPAFTKLPAKRKLASYLQVSKNTVEAAY
CEEECCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH
EQLLAEGYIESASRKGYFVCKVEQMIYVEGSDAKVEEVPFREGNYKFDFTQTGVDTKSFP
HHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCC
FTMYRKLINDVWQPHNNELLFLGHPQGEWSLREEIAKYLYESRGVRCSASQIVLGAGTQI
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEEKVQMLSLDRDGICMADLENSDANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEE
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKV
ECCCCCCCCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCE
IYMGTLSKALLPSLRMSYIVLPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKH
EEEECCHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIGKYFSNRVEVIGEDSGLHILLKVHNGMREEELIKEAAKYSI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCEE
KIYPVSTYYKDDTAPENVVLLGFAILSEEEIAQAIQLLNTAWFRKK
EEEEEEEEECCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MLELTPNLNAKSKIALYVQLYEYIKKEIKDGTIPAFTKLPAKRKLASYLQVSKNTVEAAY
CEEECCCCCCCCCEEHHHHHHHHHHHHCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHH
EQLLAEGYIESASRKGYFVCKVEQMIYVEGSDAKVEEVPFREGNYKFDFTQTGVDTKSFP
HHHHHHHHHHHCCCCCEEEEEEEEEEEEECCCCCEEECCCCCCCEEEEEEECCCCCCCCC
FTMYRKLINDVWQPHNNELLFLGHPQGEWSLREEIAKYLYESRGVRCSASQIVLGAGTQI
HHHHHHHHHHHCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCEECCCEEEECCCHHH
LVKLLFQLLKGSNYAVENPGYHRKMVVFEQGEEKVQMLSLDRDGICMADLENSDANVVFV
HHHHHHHHHCCCCCEECCCCCCEEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEE
TPSHQFPYGMIMPITRRTQLLQWAKKEEDRYIIEDDYDSEFRYSGKPIPALQGLDTDGKV
ECCCCCCCCEEECCHHHHHHHHHHHCCCCCEEEECCCCCCCEECCCCCCCCCCCCCCCCE
IYMGTLSKALLPSLRMSYIVLPKNLIKKYQKEYLFYTQSVSRMDQEVIRKFLNEGYWEKH
EEEECCHHHHHHHHHHEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
IHKMRVVYRKKRDRLVFEIGKYFSNRVEVIGEDSGLHILLKVHNGMREEELIKEAAKYSI
HHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHCEE
KIYPVSTYYKDDTAPENVVLLGFAILSEEEIAQAIQLLNTAWFRKK
EEEEEEEEECCCCCCCCEEEEEEHHHCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]