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The map label for this gene is dppB [H]

Identifier: 222093952

GI number: 222093952

Start: 186183

End: 187073

Strand: Direct

Name: dppB [H]

Synonym: BCQ_0208

Alternate gene names: 222093952

Gene position: 186183-187073 (Clockwise)

Preceding gene: 222093950

Following gene: 222093953

Centisome position: 3.57

GC content: 36.92

Gene sequence:

>891_bases
ATGGTGTTCACACTATGGGTTATTACGACGGTGACATTTCTAATTATGCATATTATTCCGGGGGATCCATTTTCATCAGA
TGCAAAGATCTTTCCGGAGGAAGTTGTGCAAAATATGAGAGCGAAGTATCACCTTGATGAACCGTTATGGAATCAATATG
TTGCTTATTTAGACGGCGTAGTTCATTTTGATTTTGGTGAATCTGTTCAATCAACCGGGCAAGGTGTATCAGAAATCATA
ACAACTGGCTTTGGTCCATCAGCAATTATTGGTTTACAAGCACTTATTATTTCATTGCTAGTCGGAATTGCTGCAGGTAC
ATTTGCTGCTCTCTATCATGGGAAAGTAATTGATTATGGTGTAAGTTTACTTGCCATCCTCGGTATTTCTATTCCGAGTT
TTATTTTAGCACCACTATTTATACAAGTATTCGCTATTCAATTCGAGCTCTTACCAGTAGCCTCTTGGGGTACATTTGAA
CATACGGTATTGCCATCCTTTGCATTAGCGTTAGGACCAATCGCAGTGATTACAAGGTTTGTTCGCTCTAATATGATCGA
AGTACTGCAGAGTGATTATATTAAGTTAGCGAGAGCGAAAGGTATACCGATTAAGAAAATTATTATAAGACATGCTCTTC
GAAATGCAATTGTTCCGGTACTTACATTTGTTGGGCCGTTAATGGCTGGGTTGTTAACGGGGACTTTTATTATTGAAAAA
ATCTTTGCAATTCCTGGTCTCGGAAAATATTTTGTAGATAGTATTTTTAACCGAGATTATCCAGTCATTATGGGGACAAC
GATTTTCTATAGTGCATTATTAATTTTTTGTATTTTCATTACAGACATTATTCATCGTATTGTTGATCCGCGTATTCGTT
CTATTACGTAA

Upstream 100 bases:

>100_bases
AAAGGGAAAAGGGAGTAATGGAAAAAGCACGTTCATAAAACTAAGTAAATATATGTGTTTAGGGGGTATTGGAGTGTATG
TAATTAAAAAATTATCGGTT

Downstream 100 bases:

>100_bases
GGAGGGAGGATATTTAAATGGGTGCTTATGAAATTAATAAACAGTTATTGACAAATGAAGAGAAAAAAGAATTAACGAGA
AATAAAGATCAGCAAGCAAT

Product: oligopeptide ABC transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESVQSTGQGVSEII
TTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYGVSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFE
HTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGLLTGTFIIEK
IFAIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIFCIFITDIIHRIVDPRIRSIT

Sequences:

>Translated_296_residues
MVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESVQSTGQGVSEII
TTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYGVSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFE
HTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGLLTGTFIIEK
IFAIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIFCIFITDIIHRIVDPRIRSIT
>Mature_296_residues
MVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGVVHFDFGESVQSTGQGVSEII
TTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYGVSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFE
HTVLPSFALALGPIAVITRFVRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGLLTGTFIIEK
IFAIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIFCIFITDIIHRIVDPRIRSIT

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=292, Percent_Identity=41.4383561643836, Blast_Score=254, Evalue=7e-69,
Organism=Escherichia coli, GI1787053, Length=293, Percent_Identity=35.4948805460751, Blast_Score=201, Evalue=5e-53,
Organism=Escherichia coli, GI1789965, Length=320, Percent_Identity=35.625, Blast_Score=197, Evalue=1e-51,
Organism=Escherichia coli, GI1789888, Length=291, Percent_Identity=34.3642611683849, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1787761, Length=317, Percent_Identity=31.5457413249211, Blast_Score=148, Evalue=4e-37,
Organism=Escherichia coli, GI1788504, Length=346, Percent_Identity=28.0346820809249, Blast_Score=130, Evalue=1e-31,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=28.9377289377289, Blast_Score=122, Evalue=3e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 32616; Mature: 32616

Theoretical pI: Translated: 7.23; Mature: 7.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGV
CEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCH
VHFDFGESVQSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYG
HEECCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
VSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFEHTVLPSFALALGPIAVITRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
VRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGLLTGTFIIEK
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFAIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIFCIFITDIIHRIVDPRIRSIT
HHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure
MVFTLWVITTVTFLIMHIIPGDPFSSDAKIFPEEVVQNMRAKYHLDEPLWNQYVAYLDGV
CEEHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHCCH
VHFDFGESVQSTGQGVSEIITTGFGPSAIIGLQALIISLLVGIAAGTFAALYHGKVIDYG
HEECCCHHHHHHCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
VSLLAILGISIPSFILAPLFIQVFAIQFELLPVASWGTFEHTVLPSFALALGPIAVITRF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHH
VRSNMIEVLQSDYIKLARAKGIPIKKIIIRHALRNAIVPVLTFVGPLMAGLLTGTFIIEK
HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFAIPGLGKYFVDSIFNRDYPVIMGTTIFYSALLIFCIFITDIIHRIVDPRIRSIT
HHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]