Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

Click here to switch to the map view.

The map label for this gene is 221636303

Identifier: 221636303

GI number: 221636303

Start: 878621

End: 879880

Strand: Reverse

Name: 221636303

Synonym: trd_A0897

Alternate gene names: NA

Gene position: 879880-878621 (Counterclockwise)

Preceding gene: 221636305

Following gene: 221636302

Centisome position: 95.87

GC content: 66.03

Gene sequence:

>1260_bases
ATGGCTGACCGCGGAGCCGCGACGACGATCGAACCGCGCCGTGTGACCGATGGTGCGGCTCGTCTGCTCGACTCGCTTCT
CCGTTACCGCGATTACCGGCTACTCTGGACATCGAGCCTCCTCACCCAGATCGCTCAGTGGATGCTGCAAGTCGCGAGCG
GGTGGCTCATGCTCGAGCTCACCAACTCGGCATTGTGGGTGGGTCTGCTCGGTTTCGCTGGCGGGCTTCCGTTCCTGCTC
GTCGCTGCACCAGCCGGCACGCTGGCTGAGCAAATCGATCGCCGACTGATTCTCCTCGCTTGCCAAACAGGAGCCCTCAC
GGTCAGTTCCCTACTGGCCTTTCTCGTTCTGAGCGGCCAGGCCACCCCACTCGCGCTCCTGATCGCGACAGTACTCAACG
GGGCCCTCCTGGCAGCCAACAACGCGACGCGTCAGGCTGCGCTTCCCAGCTACGTTCCCCGTGCCAGCATCCCCAACGCA
GTGGCACTGCTCTCGGCGGGAATGAACACGACGCGAATCGTCGGGCCGTCGCTCGCTGGCCCACTGGTCGCGACGCTCGG
AGTCGGGGGCACGCTCCTCGTCCAGGCAGGTTGTCTCGTGCTCGCCTTGCTCAACACGGCGCGCCTCCCGGCGACGCCTC
CGGCGCGTCCGGTCTGCGGTTCCTTCTTCCGAACACTGGTGGAGGGGGTGAGCTACGTTCGCCGGGTGCCGGTCGTCCTC
GCCCTTTTGCTGCTGGCCAGCGTGCCCACCCTTCTGGTGTTTCCCTATCTGCAGCTCCTACCCGTCTTTGCGCGAGATGT
TTTTCACCTCGGGCCGAGCGGGCTCGGTCTGCTCTACACCGTCGGTGGAGCGGGTGCCTTGACCGGTTCGCTCTTCGTCG
CGGGGTTGCAGCGAGCCCGCCACCGTGGCTTCCTGATGGTGGCGGTCATCGTGATCTACGGTGGCGTCATCGCGACCTTT
GCCATGACGCGCTGGTTACCGCTCGTGCTTATCTGCCTCTTCGCTGGTGGCTTTCTCGGGGCGAGCTACATGGCGCTCAA
TAACGCCCTCCTGCACCTCGCCATCGATGACGAGGTGCGGGGGCGCGTGATGGGGCTCTATATGATCACCTGGGGTTTCA
TGCCCCTCGGTGCGCTCCCGATGGGCGCGCTCGGTGACGCCATCGGTGTGCCGGCTGCCGTGCTCGCCGGTGCGGTCGCC
AGCTCACTCCTCGCCTTGCTCGTCGCTTGGCGCGTTCCGGCGCTCCTCCGCCTCCCCTGA

Upstream 100 bases:

>100_bases
GCGTTGCGGGTGGAGACGCTCACCCGGACACGGGTGCGGAAGGTGGAATGGACGACTTGCTGTCGTCCGGCCTCGGGAGT
ATGGTTCGGCAGGGGGTCGG

Downstream 100 bases:

>100_bases
GGGTGCCGTCACGATCGGTTGCCCTGGCGTACCGAGTCCCAAGCGTTCCTCGAGATAGCTGCGTAGTTCCGATTCAGCTC
GAGCAGGGACTTCCTCGGTC

Product: major facilitator superfamily MFS_1

Products: NA

Alternate protein names: Facilitator Transporter; Transporter Facilitator Family; Facilitator Superfamily Transporter; Integral Membrane Efflux Protein; Macrolide-Efflux Protein; Permease Of Facilitator Superfamily; Facilitator Superfamily Permease; Permeases Of Facilitator Superfamily

Number of amino acids: Translated: 419; Mature: 418

Protein sequence:

>419_residues
MADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLELTNSALWVGLLGFAGGLPFLL
VAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNA
VALLSAGMNTTRIVGPSLAGPLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL
ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRARHRGFLMVAVIVIYGGVIATF
AMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVRGRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVA
SSLLALLVAWRVPALLRLP

Sequences:

>Translated_419_residues
MADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLELTNSALWVGLLGFAGGLPFLL
VAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNA
VALLSAGMNTTRIVGPSLAGPLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL
ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRARHRGFLMVAVIVIYGGVIATF
AMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVRGRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVA
SSLLALLVAWRVPALLRLP
>Mature_418_residues
ADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLELTNSALWVGLLGFAGGLPFLLV
AAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNAV
ALLSAGMNTTRIVGPSLAGPLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVLA
LLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRARHRGFLMVAVIVIYGGVIATFA
MTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVRGRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVAS
SLLALLVAWRVPALLRLP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 43754; Mature: 43623

Theoretical pI: Translated: 10.57; Mature: 10.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLEL
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
TNSALWVGLLGFAGGLPFLLVAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQ
CCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC
ATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNAVALLSAGMNTTRIVGPSLAG
CCHHHHHHHHHHCCCEEECCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCHHH
PLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
HRGFLMVAVIVIYGGVIATFAMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
GRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVASSLLALLVAWRVPALLRLP
HHHHHHHHHHHHHHHHCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCC
>Mature Secondary Structure 
ADRGAATTIEPRRVTDGAARLLDSLLRYRDYRLLWTSSLLTQIAQWMLQVASGWLMLEL
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE
TNSALWVGLLGFAGGLPFLLVAAPAGTLAEQIDRRLILLACQTGALTVSSLLAFLVLSGQ
CCCHHHHHHHHHHCCCCCEEEECCCHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHCCC
ATPLALLIATVLNGALLAANNATRQAALPSYVPRASIPNAVALLSAGMNTTRIVGPSLAG
CCHHHHHHHHHHCCCEEECCCCHHHHCCCCCCCCCCCCHHHHHHHCCCCCCEECCCCHHH
PLVATLGVGGTLLVQAGCLVLALLNTARLPATPPARPVCGSFFRTLVEGVSYVRRVPVVL
HHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ALLLLASVPTLLVFPYLQLLPVFARDVFHLGPSGLGLLYTVGGAGALTGSLFVAGLQRAR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHHHHH
HRGFLMVAVIVIYGGVIATFAMTRWLPLVLICLFAGGFLGASYMALNNALLHLAIDDEVR
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECHHHH
GRVMGLYMITWGFMPLGALPMGALGDAIGVPAAVLAGAVASSLLALLVAWRVPALLRLP
HHHHHHHHHHHHHHHHCCCCCHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA