| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
Click here to switch to the map view.
The map label for this gene is yhbH [C]
Identifier: 221636280
GI number: 221636280
Start: 855089
End: 856258
Strand: Reverse
Name: yhbH [C]
Synonym: trd_A0874
Alternate gene names: 221636280
Gene position: 856258-855089 (Counterclockwise)
Preceding gene: 221636281
Following gene: 221636279
Centisome position: 93.3
GC content: 63.16
Gene sequence:
>1170_bases GTGGCGATCATGTTCACGCTGGCGATCCGGCGCGATGATTGGTCGTTGCACCGCAAGGGTGCGATCGACCAAGCGCGACA CATGGAAAAGGTGAAGGAAGCGATCAAGCGGAATCTCGCGGACATCGTCAGCGAGCAGTCGCTCATCACCTCGGACGGCA AGCGGGTGGTCCGGGTACCGATCCGGGTGCTCGAGGAGTACCGGTTCCGCTTCGACCCGGACAGCGGCCGGCAAGTCGGG CAGGGCAGCGGTGGGACGCACGTCGGGGACGTGGTGGGCCGGGTAGGGGGTGGCCAGCGGTCGGGAGACGGTCCGCAAGC GGGTGACCAGCCGGGAATCGACTACTACGAAGCGGAACTGACGATCGAGGAGCTGAGCGAACTCATCTTCGAAGATCTCG AATTGCCCAACCTGGAGGAAAAACGGCTGCGGGAACTCGAGTCGGAGGCGGTTCGCTTCACCGAGATCCGCCGGCATGGT CCGTTCGCCAACCTGGACAAGCGGCGGACGCTGCGGGAGAACTTGCGGCGGAATGCATGGCGTGGCCGTGCGCGCATCGG AGACTTCGCGAACGAGGACCTACGGTTCAAGACGTGGGAGCGGGACGTCAAGCGAGAGTCGAACGCGGTCGTTATCGCCA TGATGGATGTCTCCGGCTCGATGGGAACGTTCGAGAAGTATGTCTCGCGCGCGTTCTACTACTGGATGGTGCGTTTCTTG CGAACGAAGTACGACCGAGTCGAGATCCGGTTCATCGCCCATCATGCGGAGGCTCGGGAGGTCAGCGAGGAGGAGTTCTT CTCGCGGGGCGAGAGTGGTGGGACGCGGGCGAGCACCGCGTACGAGCTCGCCTTGCAGCTCATCCGCGAGTCGTACCCGC CGGACAGTTGGAACATTTATCCGTTCCATTTCTCGGATGGAGACAACTGGCCGTCCGACAACGAGCGTTGCCGCGAACTG GCTGAGGAGCTCCTGCGCTGCGCGAACCTCTTCGGATACGGCGAGATCCGACAGGGGCGATACACCTACCAGAGCACGCT GATGCATACGTTGCAGCGGATCGGTAGTCCCAAACTGGTGACGGTCACGATCACCGAGAAGGCGGACGTGTACCAGGCGC TGCGGCGCTTTTTCGGTCCCGAGGTGGGGCAGGAGGTGGCGCGTGCGTGA
Upstream 100 bases:
>100_bases CGATCGGCTGGTTCAGCATCACGGCTACTGTCCGGTCTGCGCGAACGAGCTCTTGAAGTACGTCGGTGCACTCTTGAGCC GCTGAGGCGAGCATCTGGAG
Downstream 100 bases:
>100_bases GTTGGCACCGAGCGAACTTCGCGAACTGGAGCGCCGGATCGGAGCGATCTGGGAAATCGGGGAGCGCATGGGGTTACGCC CGCTGCCGGTGCACTTCGAG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 389; Mature: 388
Protein sequence:
>389_residues MAIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVPIRVLEEYRFRFDPDSGRQVG QGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAELTIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHG PFANLDKRRTLRENLRRNAWRGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIYPFHFSDGDNWPSDNERCREL AEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLVTVTITEKADVYQALRRFFGPEVGQEVARA
Sequences:
>Translated_389_residues MAIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVPIRVLEEYRFRFDPDSGRQVG QGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAELTIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHG PFANLDKRRTLRENLRRNAWRGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIYPFHFSDGDNWPSDNERCREL AEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLVTVTITEKADVYQALRRFFGPEVGQEVARA >Mature_388_residues AIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVPIRVLEEYRFRFDPDSGRQVGQ GSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAELTIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHGP FANLDKRRTLRENLRRNAWRGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFLR TKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIYPFHFSDGDNWPSDNERCRELA EELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLVTVTITEKADVYQALRRFFGPEVGQEVARA
Specific function: Unknown
COG id: COG2718
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0229 family [H]
Homologues:
Organism=Escherichia coli, GI1788084, Length=418, Percent_Identity=29.9043062200957, Blast_Score=146, Evalue=3e-36,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014230 - InterPro: IPR006698 [H]
Pfam domain/function: PF04285 DUF444 [H]
EC number: NA
Molecular weight: Translated: 44978; Mature: 44847
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVP CEEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH IRVLEEYRFRFDPDSGRQVGQGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAEL HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHE TIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHGPFANLDKRRTLRENLRRNAW EHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH RGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL CCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIY HHHCCCEEEEEEEHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE PFHFSDGDNWPSDNERCRELAEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLV EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCEE TVTITEKADVYQALRRFFGPEVGQEVARA EEEECCHHHHHHHHHHHHCHHHHHHHHCC >Mature Secondary Structure AIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVP EEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH IRVLEEYRFRFDPDSGRQVGQGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAEL HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHE TIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHGPFANLDKRRTLRENLRRNAW EHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH RGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL CCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIY HHHCCCEEEEEEEHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE PFHFSDGDNWPSDNERCRELAEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLV EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCEE TVTITEKADVYQALRRFFGPEVGQEVARA EEEECCHHHHHHHHHHHHCHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12235376 [H]