Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

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The map label for this gene is yhbH [C]

Identifier: 221636280

GI number: 221636280

Start: 855089

End: 856258

Strand: Reverse

Name: yhbH [C]

Synonym: trd_A0874

Alternate gene names: 221636280

Gene position: 856258-855089 (Counterclockwise)

Preceding gene: 221636281

Following gene: 221636279

Centisome position: 93.3

GC content: 63.16

Gene sequence:

>1170_bases
GTGGCGATCATGTTCACGCTGGCGATCCGGCGCGATGATTGGTCGTTGCACCGCAAGGGTGCGATCGACCAAGCGCGACA
CATGGAAAAGGTGAAGGAAGCGATCAAGCGGAATCTCGCGGACATCGTCAGCGAGCAGTCGCTCATCACCTCGGACGGCA
AGCGGGTGGTCCGGGTACCGATCCGGGTGCTCGAGGAGTACCGGTTCCGCTTCGACCCGGACAGCGGCCGGCAAGTCGGG
CAGGGCAGCGGTGGGACGCACGTCGGGGACGTGGTGGGCCGGGTAGGGGGTGGCCAGCGGTCGGGAGACGGTCCGCAAGC
GGGTGACCAGCCGGGAATCGACTACTACGAAGCGGAACTGACGATCGAGGAGCTGAGCGAACTCATCTTCGAAGATCTCG
AATTGCCCAACCTGGAGGAAAAACGGCTGCGGGAACTCGAGTCGGAGGCGGTTCGCTTCACCGAGATCCGCCGGCATGGT
CCGTTCGCCAACCTGGACAAGCGGCGGACGCTGCGGGAGAACTTGCGGCGGAATGCATGGCGTGGCCGTGCGCGCATCGG
AGACTTCGCGAACGAGGACCTACGGTTCAAGACGTGGGAGCGGGACGTCAAGCGAGAGTCGAACGCGGTCGTTATCGCCA
TGATGGATGTCTCCGGCTCGATGGGAACGTTCGAGAAGTATGTCTCGCGCGCGTTCTACTACTGGATGGTGCGTTTCTTG
CGAACGAAGTACGACCGAGTCGAGATCCGGTTCATCGCCCATCATGCGGAGGCTCGGGAGGTCAGCGAGGAGGAGTTCTT
CTCGCGGGGCGAGAGTGGTGGGACGCGGGCGAGCACCGCGTACGAGCTCGCCTTGCAGCTCATCCGCGAGTCGTACCCGC
CGGACAGTTGGAACATTTATCCGTTCCATTTCTCGGATGGAGACAACTGGCCGTCCGACAACGAGCGTTGCCGCGAACTG
GCTGAGGAGCTCCTGCGCTGCGCGAACCTCTTCGGATACGGCGAGATCCGACAGGGGCGATACACCTACCAGAGCACGCT
GATGCATACGTTGCAGCGGATCGGTAGTCCCAAACTGGTGACGGTCACGATCACCGAGAAGGCGGACGTGTACCAGGCGC
TGCGGCGCTTTTTCGGTCCCGAGGTGGGGCAGGAGGTGGCGCGTGCGTGA

Upstream 100 bases:

>100_bases
CGATCGGCTGGTTCAGCATCACGGCTACTGTCCGGTCTGCGCGAACGAGCTCTTGAAGTACGTCGGTGCACTCTTGAGCC
GCTGAGGCGAGCATCTGGAG

Downstream 100 bases:

>100_bases
GTTGGCACCGAGCGAACTTCGCGAACTGGAGCGCCGGATCGGAGCGATCTGGGAAATCGGGGAGCGCATGGGGTTACGCC
CGCTGCCGGTGCACTTCGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 389; Mature: 388

Protein sequence:

>389_residues
MAIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVPIRVLEEYRFRFDPDSGRQVG
QGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAELTIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHG
PFANLDKRRTLRENLRRNAWRGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL
RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIYPFHFSDGDNWPSDNERCREL
AEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLVTVTITEKADVYQALRRFFGPEVGQEVARA

Sequences:

>Translated_389_residues
MAIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVPIRVLEEYRFRFDPDSGRQVG
QGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAELTIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHG
PFANLDKRRTLRENLRRNAWRGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL
RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIYPFHFSDGDNWPSDNERCREL
AEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLVTVTITEKADVYQALRRFFGPEVGQEVARA
>Mature_388_residues
AIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVPIRVLEEYRFRFDPDSGRQVGQ
GSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAELTIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHGP
FANLDKRRTLRENLRRNAWRGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFLR
TKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIYPFHFSDGDNWPSDNERCRELA
EELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLVTVTITEKADVYQALRRFFGPEVGQEVARA

Specific function: Unknown

COG id: COG2718

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0229 family [H]

Homologues:

Organism=Escherichia coli, GI1788084, Length=418, Percent_Identity=29.9043062200957, Blast_Score=146, Evalue=3e-36,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014230
- InterPro:   IPR006698 [H]

Pfam domain/function: PF04285 DUF444 [H]

EC number: NA

Molecular weight: Translated: 44978; Mature: 44847

Theoretical pI: Translated: 6.74; Mature: 6.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVP
CEEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH
IRVLEEYRFRFDPDSGRQVGQGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAEL
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHE
TIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHGPFANLDKRRTLRENLRRNAW
EHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL
CCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIY
HHHCCCEEEEEEEHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
PFHFSDGDNWPSDNERCRELAEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLV
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCEE
TVTITEKADVYQALRRFFGPEVGQEVARA
EEEECCHHHHHHHHHHHHCHHHHHHHHCC
>Mature Secondary Structure 
AIMFTLAIRRDDWSLHRKGAIDQARHMEKVKEAIKRNLADIVSEQSLITSDGKRVVRVP
EEEEEEEEECCCCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHH
IRVLEEYRFRFDPDSGRQVGQGSGGTHVGDVVGRVGGGQRSGDGPQAGDQPGIDYYEAEL
HHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEHHE
TIEELSELIFEDLELPNLEEKRLRELESEAVRFTEIRRHGPFANLDKRRTLRENLRRNAW
EHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
RGRARIGDFANEDLRFKTWERDVKRESNAVVIAMMDVSGSMGTFEKYVSRAFYYWMVRFL
CCCCCCCCCCCCCCEEHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHH
RTKYDRVEIRFIAHHAEAREVSEEEFFSRGESGGTRASTAYELALQLIRESYPPDSWNIY
HHHCCCEEEEEEEHHHHHHHCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEE
PFHFSDGDNWPSDNERCRELAEELLRCANLFGYGEIRQGRYTYQSTLMHTLQRIGSPKLV
EEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHCCCCHHHHHHHHHHHHHCCCCCEE
TVTITEKADVYQALRRFFGPEVGQEVARA
EEEECCHHHHHHHHHHHHCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]