| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636268
Identifier: 221636268
GI number: 221636268
Start: 844180
End: 846096
Strand: Reverse
Name: 221636268
Synonym: trd_A0862
Alternate gene names: NA
Gene position: 846096-844180 (Counterclockwise)
Preceding gene: 221636269
Following gene: 221636267
Centisome position: 92.19
GC content: 67.14
Gene sequence:
>1917_bases ATGCGGGTGACATGGTCGATTCTGCTCGCGATCGTCTCGATCGGCACCGGGATGTCGGGCTTGGTTGCGGCTCGCGAGGC GGAACCTGCCTGGTGGTCGCTCGCGCTGCTCGATCGCGATCGGACGTTGTGGCTGGCGACGGGGGACGGTCGGCAGCGAC AACCGGTGGCGAACGATCTAGCTGTGTCTCGCGTGCTGTGGTCGCCGGAGGGTGGGCGGCTCGCCTTGGCCGGTGTCCAG GACGGTACCCCGGTGATCGGGATCGTCACGACGGGAGCAGAGCCAACGACCCGGATCGTGGGCCGGGGCAGCGAGGCCAG TTGGTCGGGCGATGGGCGGTGGCTGGCCTGGCGCGATGGGGAATCGGTCGTCATCGCGACCCGCGAGGGGAATGTGGTTC GTTCCGTTTCAGTGGCGGCGAGGACGCTCGTCTGGTCAGCGGATGGGCGATGGCTCGCGTTCCAGCGAGCGACCGATGAA TCGCTCGATGGACCGTGCCCTGTGATGGAGCTGGGTTGGATCGAGGCCGCCAGCGGTCGCGTCGAGATCGTCGACCGAGC GATCGGGCAGATCACCTGGGTGGGGGTAGCTGGTGTCGCCGAGCAGCCACGGCTGGTGTATGCCGGGGCGCTCGACGCGC GACTCCGCTGGGTCGATCCGGCGAGCGGCGCGAGCGGCGTGTTGTGGAACGGGCCGATCGAGACGTGCCGGATGCCGCTT TTAGTCTCCGGTGACGGGCAGTGGTTGGGGTTCGTGGATGCGGTCGGAGGTGGCGACGATTTGATCTTGCTCAATCTGGT CAGCGGGGAGGCGCGCCGCATCGTCGATGTGCCGGTAGGGTATCCAGGGAGGCAAGTGCCCTCTCCGTACGTGTGGTTGG ACCCCCTGGCTCGCTTTCTCTACGTGAGCCGAAGTTTTCCGACTGTGGTGACGCGGATCGACCTGGTGACCGGGGAGCGC GCGATCGCGGCGAGCGATCCGGGGATTCTCGTAGCGATCAGTCCTGAGGGTGAGCGACTGGCCTTCGTGCAGAACTCGCC AGGGAAGCCCCCAGTGCTGGTGATCGTGGAACCGGCTACTGGTCGCCGGGAGACACTGGAGCGGATCGGCTGGGCAGCGT GGGAACCGGCAGCCTACCAGCCAGTCGTTTTCGCTGCCTGGCAACGAACCTGGGAGCGAGAGGATCGGCCGGTCGCGGCT GGCTCGGCAGCGCGGAGCTGGACGTGGGGGCCGCAACCGCTGCGGGTCGCGATCGAGCCGTACGTGGATGCGCCGGGCGG CCGGCGGGCGGTGCTGTATTGGGACAAGGCGCGGATGGAGGTGACGGAGCTGGCGGCCGATCGAGGTACCCGTTGGTACG TGACGAACGGGCTGCTGGTGCGAGAACTCATCACGGGAGCGGTCCAGGTCGGTGATGCGCTGTTCGAGCAACGGGAGCCG GCCGCTCTTCCGGTGGCGGGTGATGCCGACGATCCCGCTGGGCCGACCTATGCGACGTTTCGTGCATTCCTCGATACTCC GCCGCTCCCGGTGGGAGCGGAGATTCGCTGGCGGCTGCACCGCGATGGCACGGTGAGCGACGACGGTCCTGGTGGCGTCT TCGCGGCGGTGCTCGTTCCGGAAACACACCATACGGTGGCCGATGTCTTCTGGGAGTTTCTGCAGAGCCAGGGGCTGGTC TGGGGCGAGACCGGGCCGGTCGAGGGGAAGCTGTTCGAGCCGACGTTCTTCGCGACTGGTTTCCCGATTACCGAGCCGTA TTGGGCAACGGTGAAGGTGGGTGGAGTAGTCCAAGACGTGCTGGTTCAATGTTTCGAGCGACGGTGCTTGACGTACACGC CGGGCAATCCGCCGGGGTGGCGAGTGGAGATGGGGAATGTCGGGCAGCACTACCTGGCGTGGCGCGAGGGGTGGTGA
Upstream 100 bases:
>100_bases CGAGCGAGCAACGCTGCAGGACGGTTCGGCAAACGTGGCGGGCACGCTATGGTTAGTATTCGTTTTCGGCAGTGGGGCTG CCACGGGGAAGGGGTGCGGG
Downstream 100 bases:
>100_bases GGCGGCGATCCAGCCGGTCGCGGTGACGGCCGCAGCGCCGCGCGGTGTCTGGGTAGTGATCGTCAACTACAACACGGCAG GGCTGTTGGAACGCTGCCTG
Product: peptidase domain protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MRVTWSILLAIVSIGTGMSGLVAAREAEPAWWSLALLDRDRTLWLATGDGRQRQPVANDLAVSRVLWSPEGGRLALAGVQ DGTPVIGIVTTGAEPTTRIVGRGSEASWSGDGRWLAWRDGESVVIATREGNVVRSVSVAARTLVWSADGRWLAFQRATDE SLDGPCPVMELGWIEAASGRVEIVDRAIGQITWVGVAGVAEQPRLVYAGALDARLRWVDPASGASGVLWNGPIETCRMPL LVSGDGQWLGFVDAVGGGDDLILLNLVSGEARRIVDVPVGYPGRQVPSPYVWLDPLARFLYVSRSFPTVVTRIDLVTGER AIAASDPGILVAISPEGERLAFVQNSPGKPPVLVIVEPATGRRETLERIGWAAWEPAAYQPVVFAAWQRTWEREDRPVAA GSAARSWTWGPQPLRVAIEPYVDAPGGRRAVLYWDKARMEVTELAADRGTRWYVTNGLLVRELITGAVQVGDALFEQREP AALPVAGDADDPAGPTYATFRAFLDTPPLPVGAEIRWRLHRDGTVSDDGPGGVFAAVLVPETHHTVADVFWEFLQSQGLV WGETGPVEGKLFEPTFFATGFPITEPYWATVKVGGVVQDVLVQCFERRCLTYTPGNPPGWRVEMGNVGQHYLAWREGW
Sequences:
>Translated_638_residues MRVTWSILLAIVSIGTGMSGLVAAREAEPAWWSLALLDRDRTLWLATGDGRQRQPVANDLAVSRVLWSPEGGRLALAGVQ DGTPVIGIVTTGAEPTTRIVGRGSEASWSGDGRWLAWRDGESVVIATREGNVVRSVSVAARTLVWSADGRWLAFQRATDE SLDGPCPVMELGWIEAASGRVEIVDRAIGQITWVGVAGVAEQPRLVYAGALDARLRWVDPASGASGVLWNGPIETCRMPL LVSGDGQWLGFVDAVGGGDDLILLNLVSGEARRIVDVPVGYPGRQVPSPYVWLDPLARFLYVSRSFPTVVTRIDLVTGER AIAASDPGILVAISPEGERLAFVQNSPGKPPVLVIVEPATGRRETLERIGWAAWEPAAYQPVVFAAWQRTWEREDRPVAA GSAARSWTWGPQPLRVAIEPYVDAPGGRRAVLYWDKARMEVTELAADRGTRWYVTNGLLVRELITGAVQVGDALFEQREP AALPVAGDADDPAGPTYATFRAFLDTPPLPVGAEIRWRLHRDGTVSDDGPGGVFAAVLVPETHHTVADVFWEFLQSQGLV WGETGPVEGKLFEPTFFATGFPITEPYWATVKVGGVVQDVLVQCFERRCLTYTPGNPPGWRVEMGNVGQHYLAWREGW >Mature_638_residues MRVTWSILLAIVSIGTGMSGLVAAREAEPAWWSLALLDRDRTLWLATGDGRQRQPVANDLAVSRVLWSPEGGRLALAGVQ DGTPVIGIVTTGAEPTTRIVGRGSEASWSGDGRWLAWRDGESVVIATREGNVVRSVSVAARTLVWSADGRWLAFQRATDE SLDGPCPVMELGWIEAASGRVEIVDRAIGQITWVGVAGVAEQPRLVYAGALDARLRWVDPASGASGVLWNGPIETCRMPL LVSGDGQWLGFVDAVGGGDDLILLNLVSGEARRIVDVPVGYPGRQVPSPYVWLDPLARFLYVSRSFPTVVTRIDLVTGER AIAASDPGILVAISPEGERLAFVQNSPGKPPVLVIVEPATGRRETLERIGWAAWEPAAYQPVVFAAWQRTWEREDRPVAA GSAARSWTWGPQPLRVAIEPYVDAPGGRRAVLYWDKARMEVTELAADRGTRWYVTNGLLVRELITGAVQVGDALFEQREP AALPVAGDADDPAGPTYATFRAFLDTPPLPVGAEIRWRLHRDGTVSDDGPGGVFAAVLVPETHHTVADVFWEFLQSQGLV WGETGPVEGKLFEPTFFATGFPITEPYWATVKVGGVVQDVLVQCFERRCLTYTPGNPPGWRVEMGNVGQHYLAWREGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 69295; Mature: 69295
Theoretical pI: Translated: 4.73; Mature: 4.73
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRVTWSILLAIVSIGTGMSGLVAAREAEPAWWSLALLDRDRTLWLATGDGRQRQPVANDL CEEHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHH AVSRVLWSPEGGRLALAGVQDGTPVIGIVTTGAEPTTRIVGRGSEASWSGDGRWLAWRDG HEEHEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECC ESVVIATREGNVVRSVSVAARTLVWSADGRWLAFQRATDESLDGPCPVMELGWIEAASGR CEEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEECEEEECCCC VEIVDRAIGQITWVGVAGVAEQPRLVYAGALDARLRWVDPASGASGVLWNGPIETCRMPL EEEEHHHHCCEEEEEEECCCCCCCEEEEECCCCEEEEECCCCCCCCCEECCCHHHCCCCE LVSGDGQWLGFVDAVGGGDDLILLNLVSGEARRIVDVPVGYPGRQVPSPYVWLDPLARFL EECCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEHHHHHHHH YVSRSFPTVVTRIDLVTGERAIAASDPGILVAISPEGERLAFVQNSPGKPPVLVIVEPAT HHCCCCCEEEEEEEEEECCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCCC GRRETLERIGWAAWEPAAYQPVVFAAWQRTWEREDRPVAAGSAARSWTWGPQPLRVAIEP CHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEEEEE YVDAPGGRRAVLYWDKARMEVTELAADRGTRWYVTNGLLVRELITGAVQVGDALFEQREP EECCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCC AALPVAGDADDPAGPTYATFRAFLDTPPLPVGAEIRWRLHRDGTVSDDGPGGVFAAVLVP CEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEC ETHHTVADVFWEFLQSQGLVWGETGPVEGKLFEPTFFATGFPITEPYWATVKVGGVVQDV CCCHHHHHHHHHHHHHCCEEECCCCCCCCEEECCEEEECCCCCCCCEEEEEEECHHHHHH LVQCFERRCLTYTPGNPPGWRVEMGNVGQHYLAWREGW HHHHHHCCCEEECCCCCCCCEEEECCCCCEEEEEECCC >Mature Secondary Structure MRVTWSILLAIVSIGTGMSGLVAAREAEPAWWSLALLDRDRTLWLATGDGRQRQPVANDL CEEHHHHHHHHHHHCCCCHHEEEECCCCCCEEEEEEEECCCEEEEEECCCCCCCCCHHHH AVSRVLWSPEGGRLALAGVQDGTPVIGIVTTGAEPTTRIVGRGSEASWSGDGRWLAWRDG HEEHEEECCCCCEEEEEECCCCCCEEEEEECCCCCCEEEEECCCCCCCCCCCCEEEEECC ESVVIATREGNVVRSVSVAARTLVWSADGRWLAFQRATDESLDGPCPVMELGWIEAASGR CEEEEEECCCCEEEEEEEEEEEEEECCCCCEEEEEECCCCCCCCCCCEEEECEEEECCCC VEIVDRAIGQITWVGVAGVAEQPRLVYAGALDARLRWVDPASGASGVLWNGPIETCRMPL EEEEHHHHCCEEEEEEECCCCCCCEEEEECCCCEEEEECCCCCCCCCEECCCHHHCCCCE LVSGDGQWLGFVDAVGGGDDLILLNLVSGEARRIVDVPVGYPGRQVPSPYVWLDPLARFL EECCCCCEEEEEEECCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCEEEHHHHHHHH YVSRSFPTVVTRIDLVTGERAIAASDPGILVAISPEGERLAFVQNSPGKPPVLVIVEPAT HHCCCCCEEEEEEEEEECCEEEEECCCCEEEEECCCCCEEEEEECCCCCCCEEEEECCCC GRRETLERIGWAAWEPAAYQPVVFAAWQRTWEREDRPVAAGSAARSWTWGPQPLRVAIEP CHHHHHHHCCCCCCCCCCCCCEEEEHHHHHHCCCCCCEECCCCCCCCCCCCCCEEEEEEE YVDAPGGRRAVLYWDKARMEVTELAADRGTRWYVTNGLLVRELITGAVQVGDALFEQREP EECCCCCCEEEEEECCCCHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHHHHCCCC AALPVAGDADDPAGPTYATFRAFLDTPPLPVGAEIRWRLHRDGTVSDDGPGGVFAAVLVP CEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCEEEEEEEC ETHHTVADVFWEFLQSQGLVWGETGPVEGKLFEPTFFATGFPITEPYWATVKVGGVVQDV CCCHHHHHHHHHHHHHCCEEECCCCCCCCEEECCEEEECCCCCCCCEEEEEEECHHHHHH LVQCFERRCLTYTPGNPPGWRVEMGNVGQHYLAWREGW HHHHHHCCCEEECCCCCCCCEEEECCCCCEEEEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA