Definition Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence.
Accession NC_011961
Length 917,738

Click here to switch to the map view.

The map label for this gene is 221636089

Identifier: 221636089

GI number: 221636089

Start: 674009

End: 674281

Strand: Reverse

Name: 221636089

Synonym: trd_A0683

Alternate gene names: NA

Gene position: 674281-674009 (Counterclockwise)

Preceding gene: 221636090

Following gene: 221636087

Centisome position: 73.47

GC content: 71.43

Gene sequence:

>273_bases
ATGGACTGGTCGATCGTCTTCGTCGGGCTTCCGGTTCTTCTGCTGGTGCTCGTCGCTATCCGGCTGGCGACGCTGCGCCG
CAGCTGGTCGCTCGGCCAGAGTCTGGTCGGTGTGGCCGCCGGGGCGTTCCTGTCCGGCGCTCTCGCCGTACTCGCTGCGG
GCGGCAGTCCCGCAGCCTGGCGGGACGGGCTGCTGCTGGCAGCGCTGGGATTCCTCGTCGGTGCACTCGCCGTGCTGGCC
GCGACCGCCTGGCAACGGCGCGCGTCACGGTAA

Upstream 100 bases:

>100_bases
GGCATAGGCTGGCCCGCCTGCACGCTCGGCGAGCCGGTCGCGCTGGTATCCGGCTCATATCGAGACAGGATCGACCCTGC
GCGGGAAGGAGGTGACGACG

Downstream 100 bases:

>100_bases
CGGGAGCGGTCAGCGGGCGAAGCGGGCGGGGTCGAAGGGGGCGAGCGAGAGCGCTGGCTGCTTCCCTTCCAGCAGCTCGA
CCATCAGGAACGCGGTGATC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MDWSIVFVGLPVLLLVLVAIRLATLRRSWSLGQSLVGVAAGAFLSGALAVLAAGGSPAAWRDGLLLAALGFLVGALAVLA
ATAWQRRASR

Sequences:

>Translated_90_residues
MDWSIVFVGLPVLLLVLVAIRLATLRRSWSLGQSLVGVAAGAFLSGALAVLAAGGSPAAWRDGLLLAALGFLVGALAVLA
ATAWQRRASR
>Mature_90_residues
MDWSIVFVGLPVLLLVLVAIRLATLRRSWSLGQSLVGVAAGAFLSGALAVLAAGGSPAAWRDGLLLAALGFLVGALAVLA
ATAWQRRASR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9210; Mature: 9210

Theoretical pI: Translated: 12.63; Mature: 12.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDWSIVFVGLPVLLLVLVAIRLATLRRSWSLGQSLVGVAAGAFLSGALAVLAAGGSPAAW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RDGLLLAALGFLVGALAVLAATAWQRRASR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDWSIVFVGLPVLLLVLVAIRLATLRRSWSLGQSLVGVAAGAFLSGALAVLAAGGSPAAW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH
RDGLLLAALGFLVGALAVLAATAWQRRASR
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA