Click here to switch to the map view.

The map label for this gene is fliF [H]

Identifier: 221636057

GI number: 221636057

Start: 642557

End: 644149

Strand: Reverse

Name: fliF [H]

Synonym: trd_A0651

Alternate gene names: 221636057

Gene position: 644149-642557 (Counterclockwise)

Preceding gene: 221636058

Following gene: 221636056

Centisome position: 70.19

GC content: 66.48

Gene sequence:

>1593_bases
ATGCTGCGGCGATTCGCCCCATATTGGGAGAGTGTCAGGGAGCGATGGGACGGTCTGAGCCAGAACCGGCGAGTGGCGAT
CGTCGCCGTTGGTCTCGCGGCGCTCTTCACGGTGGCGCTTCTCCTGCTCCTCCAGCCGCCGCAACAGTATGCGCCGCTCT
TTACCGGCCTTTCGGCCGATGATGCTGCTGCGATCATCGACCAGCTCCGTCAACAGGGGGTGCCGTACAAACTGAGCAAC
GACGGGACGACGATCAGCGTTCCAGTGGAGCAAGTCGCCAAGCTTCGCCTCGCTCTGGCAGCACAGGGGTTACCGAAGAG
CGGAACGCTCGGCTTCGAACTGTTCGATCGTTCCTCGTTCGGTGTGACCGACTTCCAGCAGCGGGTCAATTACCAGCGGG
CCCTCGAGGGCGAGCTGGCGCGGACGATCAGCCAGCTGGACGGTGTCCGGTCGGCGCGTGTCCATCTGGTCATACCGGAA
GAGTCGCTCTTCAGCGACCAGCAACAGCCGACGACGGCTGCAGTGGTGCTGCAGCTCAAGCCGGGTAGCCGGCTGACGGA
CGAGCAAGTGCGCGGGGTGGTGCATCTCGTTTCAGCCTCGGTCCCTGGCTTGCAGCCGGAGCATGTGACCGTGGTCGACG
AGAGCGGAAACGCCCTCTGGTCGGGTGGTGGAGTCGCAGCTGCTGGTGGCATGAGCGATCACTTGAAAGCACAGCGTGCT
TTCGAGACCGCGATGGCGACCCAGCTGCAGACGGTCGTGGCGCGCGTGGTGGGAAACAACAACGCTGCGGTGCAGGTCAG
CGCGAGCTTCGACTGGGACCAGCGTCAGGTCGATAGCGAGATCTACAGCCCCAACGGGACGCAACCGCAGGTGCGCAGCC
AGCAGGAACGTGTGCAGACGAGCGAGGGGACCGCCAGCGGCCCGATCGGCATACCGGGAGTCGACAGCAACGTCGGGAGT
TACCAGGAAGGTGCGGCGCAGCAGAATCAGCAGCGAAGCGAACTCCGCGAGACCACGGTCAACTATGAACTGTCGCGCCA
GGTCGAGCGCGTCGTCCAGGCACCGGGCAAAGTGCAGCGGCTGTCGGTGGCGGTGGTGCTGAACAGCGCGGCGGTCGATC
CAGCGGTGGCCGAGCAGGTCCGTGACCTCGTGGCGGCTGCGGCCGGCATCGTCCCGGAGCGGGGCGATCAGGTGACCGTG
AGTGTCGTGCCGTTCACGACAGCGACGGCCGAGGAGAGCGCAGCGCAGCCGACTTTGATGGATCGGTTGCTGGAAGCGGC
GCGGCTCGGTGCGATCGTCCTGATCCCGCTGCTCGCGTTGCTGATCGCGTGGCGGGTCCTCGCCGCTCAGCGGTCAGCGT
TGCCGCCGGTCCCGCGTTACGAGGTCGCGACTCAGGTCTTACCGGGTGCGGCAGCGGGTGCGGCTGCGCCGTCCGTGGCA
GGTGGTGGAGCGGCCGGCTTACCCGGCCAGGCCGAGGCAGCGCTGAAACCGCCGAGTGGGCCTCCGCCGACACTGCGGGA
ATTGCAGGAGTTGGCGAAGAAGGATCCGGCGACGGTCGCCCACGTGGTCCGGGCCTGGTTGAACGAGGAGTGA

Upstream 100 bases:

>100_bases
GATTGCAGGCTGCGCTGCAGATCCGCAACCGGGCACTGGAAGCCTATCGTGAAGTGATGTCGATGCCGATCTGACGAATC
GAAGGGTACAGGCGAGGACG

Downstream 100 bases:

>100_bases
AACGGCGATGACAGCGCAACCGACCCTCCGCCAAGCGAACCAGGCGCAGCCACTCAAGGGGGCAGCCAAGGCGGCAGCAC
TGCTCATGGCGTTGGGGCCC

Product: flagellar M-ring protein FliF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 530

Protein sequence:

>530_residues
MLRRFAPYWESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSADDAAAIIDQLRQQGVPYKLSN
DGTTISVPVEQVAKLRLALAAQGLPKSGTLGFELFDRSSFGVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPE
ESLFSDQQQPTTAAVVLQLKPGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQRA
FETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERVQTSEGTASGPIGIPGVDSNVGS
YQEGAAQQNQQRSELRETTVNYELSRQVERVVQAPGKVQRLSVAVVLNSAAVDPAVAEQVRDLVAAAAGIVPERGDQVTV
SVVPFTTATAEESAAQPTLMDRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPRYEVATQVLPGAAAGAAAPSVA
GGGAAGLPGQAEAALKPPSGPPPTLRELQELAKKDPATVAHVVRAWLNEE

Sequences:

>Translated_530_residues
MLRRFAPYWESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSADDAAAIIDQLRQQGVPYKLSN
DGTTISVPVEQVAKLRLALAAQGLPKSGTLGFELFDRSSFGVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPE
ESLFSDQQQPTTAAVVLQLKPGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQRA
FETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERVQTSEGTASGPIGIPGVDSNVGS
YQEGAAQQNQQRSELRETTVNYELSRQVERVVQAPGKVQRLSVAVVLNSAAVDPAVAEQVRDLVAAAAGIVPERGDQVTV
SVVPFTTATAEESAAQPTLMDRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPRYEVATQVLPGAAAGAAAPSVA
GGGAAGLPGQAEAALKPPSGPPPTLRELQELAKKDPATVAHVVRAWLNEE
>Mature_530_residues
MLRRFAPYWESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSADDAAAIIDQLRQQGVPYKLSN
DGTTISVPVEQVAKLRLALAAQGLPKSGTLGFELFDRSSFGVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPE
ESLFSDQQQPTTAAVVLQLKPGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQRA
FETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERVQTSEGTASGPIGIPGVDSNVGS
YQEGAAQQNQQRSELRETTVNYELSRQVERVVQAPGKVQRLSVAVVLNSAAVDPAVAEQVRDLVAAAAGIVPERGDQVTV
SVVPFTTATAEESAAQPTLMDRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPRYEVATQVLPGAAAGAAAPSVA
GGGAAGLPGQAEAALKPPSGPPPTLRELQELAKKDPATVAHVVRAWLNEE

Specific function: The M ring may be actively involved in energy transduction [H]

COG id: COG1766

COG function: function code NU; Flagellar biosynthesis/type III secretory pathway lipoprotein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body (By similarity) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliF family [H]

Homologues:

Organism=Escherichia coli, GI1788248, Length=444, Percent_Identity=36.4864864864865, Blast_Score=250, Evalue=1e-67,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013556
- InterPro:   IPR000067
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF; PF08345 YscJ_FliF_C [H]

EC number: NA

Molecular weight: Translated: 56180; Mature: 56180

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRRFAPYWESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSAD
CCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
DAAAIIDQLRQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSGTLGFELFDRSSF
HHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC
GVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSDQQQPTTAAVVLQLK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCEEEEEEEEC
PGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQRA
CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCEEECCCCHHHHHHHHH
FETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERVQT
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SEGTASGPIGIPGVDSNVGSYQEGAAQQNQQRSELRETTVNYELSRQVERVVQAPGKVQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHH
LSVAVVLNSAAVDPAVAEQVRDLVAAAAGIVPERGDQVTVSVVPFTTATAEESAAQPTLM
EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEECCCHHHCCCHHHH
DRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPRYEVATQVLPGAAAGAAAPSVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCC
GGGAAGLPGQAEAALKPPSGPPPTLRELQELAKKDPATVAHVVRAWLNEE
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MLRRFAPYWESVRERWDGLSQNRRVAIVAVGLAALFTVALLLLLQPPQQYAPLFTGLSAD
CCCCCCHHHHHHHHHHCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCC
DAAAIIDQLRQQGVPYKLSNDGTTISVPVEQVAKLRLALAAQGLPKSGTLGFELFDRSSF
HHHHHHHHHHHCCCCEEECCCCCEEEECHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCC
GVTDFQQRVNYQRALEGELARTISQLDGVRSARVHLVIPEESLFSDQQQPTTAAVVLQLK
CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCHHHHCCCCCCCEEEEEEEEC
PGSRLTDEQVRGVVHLVSASVPGLQPEHVTVVDESGNALWSGGGVAAAGGMSDHLKAQRA
CCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEEECCCCEEECCCCHHHHHHHHH
FETAMATQLQTVVARVVGNNNAAVQVSASFDWDQRQVDSEIYSPNGTQPQVRSQQERVQT
HHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHH
SEGTASGPIGIPGVDSNVGSYQEGAAQQNQQRSELRETTVNYELSRQVERVVQAPGKVQR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHH
LSVAVVLNSAAVDPAVAEQVRDLVAAAAGIVPERGDQVTVSVVPFTTATAEESAAQPTLM
EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEECEECCCHHHCCCHHHH
DRLLEAARLGAIVLIPLLALLIAWRVLAAQRSALPPVPRYEVATQVLPGAAAGAAAPSVA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCCCCCCCCCCC
GGGAAGLPGQAEAALKPPSGPPPTLRELQELAKKDPATVAHVVRAWLNEE
CCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]