| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221636032
Identifier: 221636032
GI number: 221636032
Start: 615776
End: 616201
Strand: Reverse
Name: 221636032
Synonym: trd_A0626
Alternate gene names: NA
Gene position: 616201-615776 (Counterclockwise)
Preceding gene: 221636034
Following gene: 221636031
Centisome position: 67.14
GC content: 63.15
Gene sequence:
>426_bases ATGCCATACGAGTATCTGGACCACGAAGCGGATATCGGCCTGGAGGCGACCGGAGCGAGCCTGGAGGAAGCGCTCCGGGA TGGGGTGCGTGGTCTTCTCGCGCTCCTGGTGGATCCGGAGACGGTGGAGCCGCGCCAGGCGGTCCCGGTCCAGGCGACCG CGAGCGATCCTGGCTCCTTGTTCGTCGCTCTGCTGAACGCTGTACTGGCTGCCGTGGATCTCCACGGTATGTTTTTTCGC GACTTCGAGTTGACGCATCTGGAGCAAGTTGACGATCACTGGGTGGTCGAAGGGACACTCTGGGGAGAACCGATCGACCT GAACCGACACGCGGTCGAGATCGAGGTGAAAGCGGCGACCTACGGCGGATTGCTCGCCGAGGAGAACGAGGCAGGTTGGC GCTTGCGCTGCGTGCTCGATCTCTGA
Upstream 100 bases:
>100_bases ACGCTCAGCCTGTCGGTGTGTGGAGCGACGGGTAGAGTGCTCGCGTCTGGGGTAGGCTGTCCTGCACGGGGCAGACCCCA GGAAACGAGAGGATGCGAGA
Downstream 100 bases:
>100_bases CCGGCTGTACCGCGTAACTGGGAGGGAGAACCATGAATCGAGCACTGCACGTGCGGAAGATCCATGAGTATCTTTTCGAG ATCCCGCCGCACGGCAAGAT
Product: protein archease (protein zbtb8os) (zinc finger and btb domain-containing opposite strand protein 8)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 141; Mature: 140
Protein sequence:
>141_residues MPYEYLDHEADIGLEATGASLEEALRDGVRGLLALLVDPETVEPRQAVPVQATASDPGSLFVALLNAVLAAVDLHGMFFR DFELTHLEQVDDHWVVEGTLWGEPIDLNRHAVEIEVKAATYGGLLAEENEAGWRLRCVLDL
Sequences:
>Translated_141_residues MPYEYLDHEADIGLEATGASLEEALRDGVRGLLALLVDPETVEPRQAVPVQATASDPGSLFVALLNAVLAAVDLHGMFFR DFELTHLEQVDDHWVVEGTLWGEPIDLNRHAVEIEVKAATYGGLLAEENEAGWRLRCVLDL >Mature_140_residues PYEYLDHEADIGLEATGASLEEALRDGVRGLLALLVDPETVEPRQAVPVQATASDPGSLFVALLNAVLAAVDLHGMFFRD FELTHLEQVDDHWVVEGTLWGEPIDLNRHAVEIEVKAATYGGLLAEENEAGWRLRCVLDL
Specific function: Unknown
COG id: COG1371
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0211 (archease) family [H]
Homologues:
Organism=Homo sapiens, GI30425510, Length=140, Percent_Identity=32.1428571428571, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002804 - InterPro: IPR022952 [H]
Pfam domain/function: PF01951 DUF101 [H]
EC number: NA
Molecular weight: Translated: 15490; Mature: 15358
Theoretical pI: Translated: 4.00; Mature: 4.00
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPYEYLDHEADIGLEATGASLEEALRDGVRGLLALLVDPETVEPRQAVPVQATASDPGSL CCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHH FVALLNAVLAAVDLHGMFFRDFELTHLEQVDDHWVVEGTLWGEPIDLNRHAVEIEVKAAT HHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEE YGGLLAEENEAGWRLRCVLDL CCCEEEECCCCCEEEEEEEEC >Mature Secondary Structure PYEYLDHEADIGLEATGASLEEALRDGVRGLLALLVDPETVEPRQAVPVQATASDPGSL CCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEECCCCCHHH FVALLNAVLAAVDLHGMFFRDFELTHLEQVDDHWVVEGTLWGEPIDLNRHAVEIEVKAAT HHHHHHHHHHHHHHCCEEEECCCHHHHHCCCCCEEEEEEECCCCCCCCCEEEEEEEEEEE YGGLLAEENEAGWRLRCVLDL CCCEEEECCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]