| Definition | Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence. |
|---|---|
| Accession | NC_011961 |
| Length | 917,738 |
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The map label for this gene is 221635901
Identifier: 221635901
GI number: 221635901
Start: 485535
End: 486839
Strand: Reverse
Name: 221635901
Synonym: trd_A0495
Alternate gene names: NA
Gene position: 486839-485535 (Counterclockwise)
Preceding gene: 221635903
Following gene: 221635900
Centisome position: 53.05
GC content: 68.12
Gene sequence:
>1305_bases ATGCGTGACCGAACGCTTCCGACCGTATCGCCGCGACGGACGACCGGCCTACTGCTCGCCTCGAGCGCTGTCCTGCTAGT CAGCCTCATCGCCGCATCCCTGACCCGAATCGGTGTACCGTCGCGCTCGCTCCCCCATCTGGGTGCCGCACCGAACGCGA TCGTCCGTCCCCTGGTTCTGCTCCCAGTCGGCACCACCGATGACCCGAGACTGGCCGCCCGCACGACCGGACTCGTTCTC GTCGATGCCCGATCGGGAGCGATTCTGGACCGCCACGCGGTCGCTGACTCGACCGAGGTCTTGAGCGCCTCTTTCGTCTC GCCTGGCGACCGCATCGTCTTCTACACCGGCGAGCACACGGGGCCGCACGCACGGCTCGAGGTCCGTCGCCTTCCTGGCT GGGATATCGAGTCCGTTGTCACGATCGAAGCCAGTATCCCGCCAGCCCGCGTGCTCGCTGAGCGCTTCCCCTCGATCAGC GCCTCTGACCCGACGCTCCTCGCGTTCGCAGCGGAACCGCAGGGACGGTGGGCTGCCGTCGCGTTCTGGTCGCTGATAAC GCCCAAGCCCGACGGTCCATCCAGCCAGCTCGTGTGGGTGACCATGGTGGATCTCGAGCGTGCTGTGTGGGCGGGATGGG CTTCCCCGCTCCCCTCGAGCCAGGCAGCTTCGCTCGTCGCCCTTCCCGACCGTATCCTGGTGCTCGGCCACGAGCTTCGG ACCTCGAGCCGGCGCAGTGTCGGCACGGTCGTCGCGCTCGACCCGCAGAGCGGCGAAGCGCTCGGCCAGCTGACCTTGGA GAGTGCTTCGACGACGGCCAAGCCGCTGGGAGAGGGACCGGACGACGAGCAAGCCACCTTCTCGACCGCGCTCGACCCCG TTCTCTGGAACGGCCAACTGTTGGTGGTGACCACCGACCTGGAAGCGTTCGTCATCGACCCCAGTGCGCTCACCGTCACC GCGCACTACCCACCGCTCGCGGACCGGCTCGTCGCCGCCGGACGACCCTTCATCACGGGAGATCGGCTGGTCGTCGGAGG TGGTGCAGTGCGCGTGATCGATATCTCGTCGTGGCGACTGCTGGCCACCCACCCCTTGCCGCAGATGCCGGAGACCTGGT GGATCGCCGCCGGCCTGGTCGACCAGGAGACGTTGCTCTTGACCGGCACACGCGAGGGCTGCCTGCGGCACCTGGATCTG GCGACGAGTCGTCTCAGCGCGCCGCTCGCGTGCGGCTTCCTGGTCGACTATCCTGCCCCGCTGTTCGGCTGGCCAGTCTT CTTCGCAGGCTCGAGCGGTCCCTGA
Upstream 100 bases:
>100_bases AGCCTACTGCACGCGCGCACAGGTGTGGTCGCAATGCTGATCGGTCTCCTCGTACCAACCGAAACCGGATGCTCAGAGAG CCAACGCTCGGAGGTCGACC
Downstream 100 bases:
>100_bases AGAGACCGGTTCCAGAGAGGAGTTCTCCGATGCTCGCTCAATTTACTGGCCGCGCCGATGGCCGACCGGTCTCCCGCCCC CTCGTCAAGCTTCTCGTGCT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 434; Mature: 434
Protein sequence:
>434_residues MRDRTLPTVSPRRTTGLLLASSAVLLVSLIAASLTRIGVPSRSLPHLGAAPNAIVRPLVLLPVGTTDDPRLAARTTGLVL VDARSGAILDRHAVADSTEVLSASFVSPGDRIVFYTGEHTGPHARLEVRRLPGWDIESVVTIEASIPPARVLAERFPSIS ASDPTLLAFAAEPQGRWAAVAFWSLITPKPDGPSSQLVWVTMVDLERAVWAGWASPLPSSQAASLVALPDRILVLGHELR TSSRRSVGTVVALDPQSGEALGQLTLESASTTAKPLGEGPDDEQATFSTALDPVLWNGQLLVVTTDLEAFVIDPSALTVT AHYPPLADRLVAAGRPFITGDRLVVGGGAVRVIDISSWRLLATHPLPQMPETWWIAAGLVDQETLLLTGTREGCLRHLDL ATSRLSAPLACGFLVDYPAPLFGWPVFFAGSSGP
Sequences:
>Translated_434_residues MRDRTLPTVSPRRTTGLLLASSAVLLVSLIAASLTRIGVPSRSLPHLGAAPNAIVRPLVLLPVGTTDDPRLAARTTGLVL VDARSGAILDRHAVADSTEVLSASFVSPGDRIVFYTGEHTGPHARLEVRRLPGWDIESVVTIEASIPPARVLAERFPSIS ASDPTLLAFAAEPQGRWAAVAFWSLITPKPDGPSSQLVWVTMVDLERAVWAGWASPLPSSQAASLVALPDRILVLGHELR TSSRRSVGTVVALDPQSGEALGQLTLESASTTAKPLGEGPDDEQATFSTALDPVLWNGQLLVVTTDLEAFVIDPSALTVT AHYPPLADRLVAAGRPFITGDRLVVGGGAVRVIDISSWRLLATHPLPQMPETWWIAAGLVDQETLLLTGTREGCLRHLDL ATSRLSAPLACGFLVDYPAPLFGWPVFFAGSSGP >Mature_434_residues MRDRTLPTVSPRRTTGLLLASSAVLLVSLIAASLTRIGVPSRSLPHLGAAPNAIVRPLVLLPVGTTDDPRLAARTTGLVL VDARSGAILDRHAVADSTEVLSASFVSPGDRIVFYTGEHTGPHARLEVRRLPGWDIESVVTIEASIPPARVLAERFPSIS ASDPTLLAFAAEPQGRWAAVAFWSLITPKPDGPSSQLVWVTMVDLERAVWAGWASPLPSSQAASLVALPDRILVLGHELR TSSRRSVGTVVALDPQSGEALGQLTLESASTTAKPLGEGPDDEQATFSTALDPVLWNGQLLVVTTDLEAFVIDPSALTVT AHYPPLADRLVAAGRPFITGDRLVVGGGAVRVIDISSWRLLATHPLPQMPETWWIAAGLVDQETLLLTGTREGCLRHLDL ATSRLSAPLACGFLVDYPAPLFGWPVFFAGSSGP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45980; Mature: 45980
Theoretical pI: Translated: 5.63; Mature: 5.63
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRDRTLPTVSPRRTTGLLLASSAVLLVSLIAASLTRIGVPSRSLPHLGAAPNAIVRPLVL CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEE LPVGTTDDPRLAARTTGLVLVDARSGAILDRHAVADSTEVLSASFVSPGDRIVFYTGEHT EECCCCCCCCEEEEECCEEEEECCCCCEEEHHHCCCCHHHHEECCCCCCCEEEEEECCCC GPHARLEVRRLPGWDIESVVTIEASIPPARVLAERFPSISASDPTLLAFAAEPQGRWAAV CCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEE AFWSLITPKPDGPSSQLVWVTMVDLERAVWAGWASPLPSSQAASLVALPDRILVLGHELR EEEEEECCCCCCCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEHHHC TSSRRSVGTVVALDPQSGEALGQLTLESASTTAKPLGEGPDDEQATFSTALDPVLWNGQL CCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCEE LVVTTDLEAFVIDPSALTVTAHYPPLADRLVAAGRPFITGDRLVVGGGAVRVIDISSWRL EEEEECCEEEEECCCEEEEEECCCCHHHHHHHCCCCEEECCEEEECCCEEEEEEECCCEE LATHPLPQMPETWWIAAGLVDQETLLLTGTREGCLRHLDLATSRLSAPLACGFLVDYPAP EEECCCCCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCC LFGWPVFFAGSSGP HHCCEEEEECCCCC >Mature Secondary Structure MRDRTLPTVSPRRTTGLLLASSAVLLVSLIAASLTRIGVPSRSLPHLGAAPNAIVRPLVL CCCCCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHCCEEE LPVGTTDDPRLAARTTGLVLVDARSGAILDRHAVADSTEVLSASFVSPGDRIVFYTGEHT EECCCCCCCCEEEEECCEEEEECCCCCEEEHHHCCCCHHHHEECCCCCCCEEEEEECCCC GPHARLEVRRLPGWDIESVVTIEASIPPARVLAERFPSISASDPTLLAFAAEPQGRWAAV CCCCEEEEEECCCCCCCEEEEEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCCCEEEE AFWSLITPKPDGPSSQLVWVTMVDLERAVWAGWASPLPSSQAASLVALPDRILVLGHELR EEEEEECCCCCCCCCCEEEEEEEEHHHHHHHCCCCCCCCCCCCEEEECCCEEEEEEHHHC TSSRRSVGTVVALDPQSGEALGQLTLESASTTAKPLGEGPDDEQATFSTALDPVLWNGQL CCCCCCCCEEEEECCCCCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCEEECCEE LVVTTDLEAFVIDPSALTVTAHYPPLADRLVAAGRPFITGDRLVVGGGAVRVIDISSWRL EEEEECCEEEEECCCEEEEEECCCCHHHHHHHCCCCEEECCEEEECCCEEEEEEECCCEE LATHPLPQMPETWWIAAGLVDQETLLLTGTREGCLRHLDLATSRLSAPLACGFLVDYPAP EEECCCCCCCCCEEEEECCCCCCEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCCC LFGWPVFFAGSSGP HHCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA