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The map label for this gene is dppB [H]

Identifier: 221635731

GI number: 221635731

Start: 311498

End: 312430

Strand: Reverse

Name: dppB [H]

Synonym: trd_A0325

Alternate gene names: 221635731

Gene position: 312430-311498 (Counterclockwise)

Preceding gene: 221635732

Following gene: 221635730

Centisome position: 34.04

GC content: 58.31

Gene sequence:

>933_bases
ATGGCGCAGTACATCGCTCGTCGCCTTCTGATGGTCATTCCGACGTTGATCGCGATTTCGCTCATCACGTTCATCATCAT
GCATGCGACACCAGGAAGCCCGATGCAGCCGAGTGCCCCCCAGGCGAACCCATTGCCACCAGCTGCCCAAGAAGCGCTGG
CCAAGAAATATGGGCTCGACAAGCCGCTGTGGCAACAATACCTGCACTATCTGAGAAACATCTTCACGCTCGACTTCGGG
TTCTCGTACCAGTACCAGACCCGCGAGGTCCGGGAGATCATGGCGACCACGCTTCCCGTCTCGCTCCATCTCGGTGTCAT
GGCGATGGCTCTCGCCATCTTGATCGGCATCCCGCTCGGCGTCATTGCAGCCATCAATCAGAACGGCCCGGTCGATTATC
TCTGCAGTTTCATTGCGACGCTCGGCGTGGCTGTGCCCAATTTCATCTTGGCCCTCTTCCTCATTGTGCTGCTCGTCCTG
CTCATCCCGATCATTCCGCGCACCGGCGGCTGGGATTCACCGATCGATTGGGTCCTGCCCACGCTCGCACTTTCGCTCGG
CCCGATCGGGATCATCGCCCGTTATACCCGGGCCAGCATGGTCGAAGTCCTGCGGCAGGACTTCATCCGTACCGCCTACG
CCAAGGGACTGAGCGATCGACAGGTCATCGTGCGACACGTGCTGAAAAACGGCTTGATTCCACCCATCACCATCCTGGGC
CCGATGTTCGCTGCCATCGGCACCGGCTCACCGTTCGTCGAGAAGATCTTTCGCGTTCCCGGGATGGGACGCTTCTTTGT
CGATAGCCTGATCGCTCGCGACTACCCGATGATCATGGCCGTGATTTTGATCTATGGAGCGTTCCTCGCCATCATGAATA
TTGTCGTCGATATCTTGTACGGTGTCGTCGATCCTCGTATCCGCCTGGCTTGA

Upstream 100 bases:

>100_bases
CAACGCTTTCGCGCATGTGGTACTGTGCTCTCGCAAGCATCTCACTGTGCCGTTTTCGGCAAACACGGACCGGGTCACAG
GGCAAGCTGAGGAGTGATGC

Downstream 100 bases:

>100_bases
GCCGAAACGCGGAGAGGAGCTCACCGCATGGCCACCACCGGTGCTGGGATGACCGGTCGAGCAGAGCGGGCCGATGCCCT
CATTTGGGCAGCTCGCCCTC

Product: dipeptide transport system permease protein DppB

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MAQYIARRLLMVIPTLIAISLITFIIMHATPGSPMQPSAPQANPLPPAAQEALAKKYGLDKPLWQQYLHYLRNIFTLDFG
FSYQYQTREVREIMATTLPVSLHLGVMAMALAILIGIPLGVIAAINQNGPVDYLCSFIATLGVAVPNFILALFLIVLLVL
LIPIIPRTGGWDSPIDWVLPTLALSLGPIGIIARYTRASMVEVLRQDFIRTAYAKGLSDRQVIVRHVLKNGLIPPITILG
PMFAAIGTGSPFVEKIFRVPGMGRFFVDSLIARDYPMIMAVILIYGAFLAIMNIVVDILYGVVDPRIRLA

Sequences:

>Translated_310_residues
MAQYIARRLLMVIPTLIAISLITFIIMHATPGSPMQPSAPQANPLPPAAQEALAKKYGLDKPLWQQYLHYLRNIFTLDFG
FSYQYQTREVREIMATTLPVSLHLGVMAMALAILIGIPLGVIAAINQNGPVDYLCSFIATLGVAVPNFILALFLIVLLVL
LIPIIPRTGGWDSPIDWVLPTLALSLGPIGIIARYTRASMVEVLRQDFIRTAYAKGLSDRQVIVRHVLKNGLIPPITILG
PMFAAIGTGSPFVEKIFRVPGMGRFFVDSLIARDYPMIMAVILIYGAFLAIMNIVVDILYGVVDPRIRLA
>Mature_309_residues
AQYIARRLLMVIPTLIAISLITFIIMHATPGSPMQPSAPQANPLPPAAQEALAKKYGLDKPLWQQYLHYLRNIFTLDFGF
SYQYQTREVREIMATTLPVSLHLGVMAMALAILIGIPLGVIAAINQNGPVDYLCSFIATLGVAVPNFILALFLIVLLVLL
IPIIPRTGGWDSPIDWVLPTLALSLGPIGIIARYTRASMVEVLRQDFIRTAYAKGLSDRQVIVRHVLKNGLIPPITILGP
MFAAIGTGSPFVEKIFRVPGMGRFFVDSLIARDYPMIMAVILIYGAFLAIMNIVVDILYGVVDPRIRLA

Specific function: Part of the binding-protein-dependent transport system for dipeptides; probably responsible for the translocation of the substrate across the membrane. Is expressed to facilitate adaptation to nutrient deficiency conditions [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=310, Percent_Identity=40.6451612903226, Blast_Score=237, Evalue=9e-64,
Organism=Escherichia coli, GI1787053, Length=311, Percent_Identity=38.5852090032154, Blast_Score=214, Evalue=9e-57,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=36.094674556213, Blast_Score=211, Evalue=6e-56,
Organism=Escherichia coli, GI1789888, Length=312, Percent_Identity=35.8974358974359, Blast_Score=182, Evalue=2e-47,
Organism=Escherichia coli, GI1788504, Length=364, Percent_Identity=28.8461538461538, Blast_Score=145, Evalue=3e-36,
Organism=Escherichia coli, GI1787761, Length=329, Percent_Identity=33.434650455927, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=29.3040293040293, Blast_Score=131, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34106; Mature: 33974

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQYIARRLLMVIPTLIAISLITFIIMHATPGSPMQPSAPQANPLPPAAQEALAKKYGLD
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC
KPLWQQYLHYLRNIFTLDFGFSYQYQTREVREIMATTLPVSLHLGVMAMALAILIGIPLG
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VIAAINQNGPVDYLCSFIATLGVAVPNFILALFLIVLLVLLIPIIPRTGGWDSPIDWVLP
HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
TLALSLGPIGIIARYTRASMVEVLRQDFIRTAYAKGLSDRQVIVRHVLKNGLIPPITILG
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHH
PMFAAIGTGSPFVEKIFRVPGMGRFFVDSLIARDYPMIMAVILIYGAFLAIMNIVVDILY
HHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
GVVDPRIRLA
HHHCCCCCCC
>Mature Secondary Structure 
AQYIARRLLMVIPTLIAISLITFIIMHATPGSPMQPSAPQANPLPPAAQEALAKKYGLD
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCC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HHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1766370; 9384377 [H]